CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40587	Soybean	cytosol	90.58	90.36
GSMUA_Achr11P...	Banana	cytosol	47.83	56.57
AT1G01970.1	Thale cress	mitochondrion	53.62	54.28
Solyc01g091450.2.1	Tomato	plastid	53.86	53.73
PGSC0003DMT400033219	Potato	cytosol	53.38	53.25
Bra033224.1-P	Field mustard	plastid	50.72	52.11
CDX90067	Canola	plastid	50.24	51.61
VIT_15s0048g00810.t01	Wine grape	cytosol	12.08	51.55
CDY15139	Canola	plastid	49.28	51.39
EER99862	Sorghum	plastid	46.38	47.41
Zm00001d022514_P001	Maize	plastid	44.2	44.31
Os07t0661900-01	Rice	plastid	43.96	41.36
TraesCS2D01G128400.1	Wheat	plastid	44.44	39.57
HORVU2Hr1G022100.1	Barley	plastid	42.75	38.99
TraesCS2A01G125300.1	Wheat	plastid	42.75	38.06
TraesCS2B01G147800.1	Wheat	plastid	43.48	38.05
KRH05834	Soybean	mitochondrion	29.47	17.6
KRH15184	Soybean	mitochondrion	28.99	17.37

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100778274	MapMan:35.1	EMBL:ACUP02011454	EnsemblPlantsGene:GLYMA_18G221100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1N3F2	InterPro:IPR002885	InterPro:IPR011990	ProteinID:KRH00578.1	EnsemblPlants:KRH00579	ProteinID:KRH00579
ProteinID:KRH00579.1	PFAM:PF01535	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF457	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233DFCE	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:-:50828172..50831458

Molecular Weight (calculated)

47545.8 Da

IEP (calculated)

6.929

GRAVY (calculated)

-0.248

Length

414 amino acids

Sequence
(BLAST)

001: MMGTYCNNLL CNFYHPNYSI TNDVTKFCRV LTRGNSLCQN PVYFGLRKHR FDSVLVSVGL EEVVKEEGKE DNDRRYRWIE VGKNVPKEQQ QAISKLPFRM
101: ADRCKALMRQ IICYSAEKGS MSDLLRSWVK LMKPTRADWL SVLKELKIRE HPVYLEVAKH ALMEESFEVN IRDYTKIIHY YGEHNLLEDA EKFLTLMKQR
201: GFIYDQVILT TMVHMYSKAG NHDRAKEYFE EIKLLGKPLD KRSYGSMIMA YIRAGMPEEG ENLLQEMEAQ EILAGSEVYK ALLRAYSMIG NAEGAQRVFD
301: AIQLAGITPD DKICSLVVNA YVMAGQSQKA LIAFENMRRA GIKPSDKCIA SVLVAYEKES KINTALEFLI DLERDGIMVE EEASAVLAKW FRKLGVVEEV
401: ELVLRDFVTS NQIS

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.