CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05834	Soybean	mitochondrion	85.53	85.28
PGSC0003DMT400038307	Potato	cytosol	16.64	69.28
Solyc07g025200.1.1	Tomato	cytosol	27.06	60.32
Solyc07g025230.1.1	Tomato	cytosol	26.92	60.0
PGSC0003DMT400013736	Potato	cytosol	53.69	58.89
VIT_18s0001g12630.t01	Wine grape	mitochondrion	59.19	56.81
CDY39372	Canola	mitochondrion	48.77	49.05
CDY29423	Canola	mitochondrion	50.8	48.89
Bra025746.1-P	Field mustard	mitochondrion	50.51	48.61
AT1G19520.1	Thale cress	mitochondrion	50.07	47.72
GSMUA_Achr3P14510_001	Banana	mitochondrion	48.05	46.76
Solyc07g025210.1.1	Tomato	plastid	24.75	45.48
TraesCS6B01G249200.1	Wheat	mitochondrion	40.09	41.34
TraesCS6A01G219800.1	Wheat	mitochondrion	39.8	41.04
TraesCS6D01G202700.1	Wheat	mitochondrion	39.22	40.45
Os02t0611400-01	Rice	mitochondrion	39.22	39.68
HORVU6Hr1G056180.2	Barley	mitochondrion	38.21	39.17
Zm00001d017185_P001	Maize	mitochondrion	36.9	37.89
EES05410	Sorghum	mitochondrion	37.05	37.54
GSMUA_AchrUn_...	Banana	cytosol	8.54	33.91
GSMUA_Achr2P23090_001	Banana	cytosol	11.29	33.77
KRH40587	Soybean	cytosol	17.66	29.4
KRH00579	Soybean	cytosol	17.37	28.99

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100801933	MapMan:35.1	EMBL:ACUP02008569	ncoils:Coil	EnsemblPlantsGene:GLYMA_14G073700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	UniProt:I1M8B3	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH15184	ProteinID:KRH15184
ProteinID:KRH15184.1	PFAM:PF01535	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF515	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233B2A5	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:-:6177750..6180429

Molecular Weight (calculated)

78634.0 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.454

Length

691 amino acids

Sequence
(BLAST)

001: MSWRTLASTS RHTFKRLNAI LRSPSTTFPS SRASPSLFHH APFSTTTLRS PQPTNALIDP KLLSPHNDAD DDETTNEFLS RFVWIMRKKV NEAYPDSDKP
101: AVDGMLFAIV ERFVSEMEKG GIETMSSFRS ADFSEDLWRT VWEVSNLVLE DMDKEIKKEK MKGFLQCEEV KEMCRFAGEV GIRGDLLREL RFKWAREKLE
201: EHEFYEGLER LRKETQSEGN AIDVPKEEKE KVVVGLPKRR GKIRYKIYGL DLSDPKWAQV ADRIHEAEQV FWPQEPKPIT GKAKIVTTKI LLSKEEEEEE
301: EEEDGLQSLL AEWVELVQPS RVEWMDLLDK LKEHNPGLYF KVAEMVLTED SFQTHVSDYS RLIDIYAKEN RFDDVERMLK KLNENGLQVD ASIASTLVLM
401: YCKRGDLAHA KEAFEVLTSL GFQPDAHVYN SMITALVNNG QPKLGEKLMR DMDDRHIPIT KDIYMALLRS FSQLGDAVGA ERISNTMQFA GIQQGMDMET
501: STLLIEASAL AVPCNPDQAR SHFDYMIKLG HKPDDRCTAS MISAYEKKNY LDNALNLLLE LEKDGFEPGV ATYSVLVDWL GKLQLVDEAE QLLGKIALLG
601: EAPPFKLQVS LCDMYARAGN EKKALQSLGV LEARKDELGQ AEFERILSGL IDGGFQKDAQ RISQIMEAQG FDASRVKFKL SKPVSRAPSF R

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.