Factsheet for PGSC0003DMT400013736

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g025200.1.1	Tomato	cytosol	47.78	97.1
Solyc07g025230.1.1	Tomato	cytosol	47.62	96.77
PGSC0003DMT400038307	Potato	cytosol	24.29	92.17
Solyc07g025210.1.1	Tomato	plastid	39.68	66.49
VIT_18s0001g12630.t01	Wine grape	mitochondrion	70.16	61.39
KRH15184	Soybean	mitochondrion	58.89	53.69
KRH05834	Soybean	mitochondrion	58.89	53.54
GSMUA_Achr3P14510_001	Banana	mitochondrion	55.56	49.3
Bra025746.1-P	Field mustard	mitochondrion	55.56	48.75
CDY29423	Canola	mitochondrion	55.56	48.75
CDY39372	Canola	mitochondrion	53.02	48.62
AT1G19520.1	Thale cress	mitochondrion	54.13	47.03
TraesCS6D01G202700.1	Wheat	mitochondrion	43.33	40.75
TraesCS6B01G249200.1	Wheat	mitochondrion	43.02	40.45
TraesCS6A01G219800.1	Wheat	mitochondrion	43.02	40.45
GSMUA_Achr2P23090_001	Banana	cytosol	14.76	40.26
Zm00001d017185_P001	Maize	mitochondrion	42.7	39.97
HORVU6Hr1G056180.2	Barley	mitochondrion	42.54	39.76
Os02t0611400-01	Rice	mitochondrion	42.54	39.24
EES05410	Sorghum	mitochondrion	42.38	39.15
GSMUA_AchrUn_...	Banana	cytosol	9.52	34.48
PGSC0003DMT400033219	Potato	cytosol	19.52	29.64

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1A3A0	PFAM:PF01535	PFAM:PF17177	EnsemblPlantsGene:PGSC0003DMG400005374
PGSC:PGSC0003DMG400005374	EnsemblPlants:PGSC0003DMT400013736	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF515
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002962E20	SEG:seg

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005374]

Coordinates

chr7:+:20458606..20461709

Molecular Weight (calculated)

72143.5 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.482

Length

630 amino acids

Sequence
(BLAST)

001: MVSETEDDAT MNDFLSRFVW IMRGKLMEVY PDFEKKTIDE MLLVIVAKVV SELEKGGFDQ IVGGKSSSPS QDDDFSHDLW KTVWEVSNVV LEDMEKAKRK
101: DKMKNFLQAE QVKEMCRFAG EVGIRGDMLR EYRFKWAREK MEESEFYHSL ERFKEEEQQG TEYGIGVVEH QSRAEDPKLV ALPKRRGKIN YKIYGLDLSD
201: SKWSQVADKI HEAEKIICPQ EPKKIDGKCK IITEKLLSSQ DQDDYSPLIA EWVQLLQPSR VDWINLLDRL NNRNPSLYLK IAEHVLGEES FQTNIRDYSK
301: LVDAHARDNR REDAERIIRK MSENGIVPDI LTSTIMVHMY SKAGDLDRAK AAFESLRTQG FLPDMGVYNS MILAYVNAGD PKKGESLMKE MEVRDIKPSK
401: KIYMALLRSF SQHGDANGAH RIATTMQFSG FQPTLESCML LVEAFGKAGD PDQARQNFDY MIKLGHKPDD RCTATMIAAY EKNNLLDKAL NLLIELEKDG
501: FEPGVATYSV LVDWLSKMQL IDEAEQLLDK IAEQGEAPPF KVHISLCDMY ARANVEKKAL QALGVLEAKQ EQLEPEDFER IIWSLIAGGF VQDAQKFQGL
601: MEARGFTVSE QLQVTLMASQ TFLRRRPSVR

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.