Factsheet for Zm00001d017185_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05410	Sorghum	mitochondrion	86.03	84.9
TraesCS6D01G202700.1	Wheat	mitochondrion	65.82	66.12
TraesCS6B01G249200.1	Wheat	mitochondrion	65.68	65.97
TraesCS6A01G219800.1	Wheat	mitochondrion	65.53	65.82
HORVU6Hr1G056180.2	Barley	mitochondrion	65.38	65.28
Os02t0611400-01	Rice	mitochondrion	64.34	63.4
GSMUA_Achr3P14510_001	Banana	mitochondrion	47.25	44.79
PGSC0003DMT400038307	Potato	cytosol	10.85	43.98
GSMUA_Achr2P23090_001	Banana	cytosol	15.01	43.72
Solyc07g025230.1.1	Tomato	cytosol	19.91	43.23
Solyc07g025200.1.1	Tomato	cytosol	19.76	42.9
PGSC0003DMT400013736	Potato	cytosol	39.97	42.7
VIT_18s0001g12630.t01	Wine grape	mitochondrion	41.46	38.75
KRH05834	Soybean	mitochondrion	39.08	37.95
GSMUA_AchrUn_...	Banana	cytosol	9.81	37.93
CDY39372	Canola	mitochondrion	37.89	37.12
KRH15184	Soybean	mitochondrion	37.89	36.9
Bra025746.1-P	Field mustard	mitochondrion	38.93	36.49
CDY29423	Canola	mitochondrion	38.93	36.49
AT1G19520.1	Thale cress	mitochondrion	38.48	35.72
Solyc07g025210.1.1	Tomato	plastid	16.94	30.32
Zm00001d022514_P001	Maize	plastid	15.16	24.7

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100191497	MapMan:35.1	ProteinID:AQK72538.1	UniProt:B4F906	EMBL:BT033594
ncoils:Coil	GO:GO:0000741	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007275
GO:GO:0008150	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0030154	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF515
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00017B61B2	EnsemblPlantsGene:Zm00001d017185
EnsemblPlants:Zm00001d017185_P001	EnsemblPlants:Zm00001d017185_T001	SEG:seg	:	:	:

Description

Protein NUCLEAR FUSION DEFECTIVE 5 mitochondrial

Coordinates

chr5:+:188266574..188270874

Molecular Weight (calculated)

76573.2 Da

IEP (calculated)

6.532

GRAVY (calculated)

-0.414

Length

673 amino acids

Sequence
(BLAST)

001: MRALLSLSRL ARRLPASLSP VRAPTTLLLR HIHADAPPPP PSHDSTPFVS RILESEPCLT PNDESEPASD PTLDEFLARF VAAFRPRLAA AFPNHDRDVL
101: DEMLRLVADA VLCRLTGTDR GGDAIELNDD LWAAVWEVSA SVREAMRRDQ VRADLRQYLH CDEVKEMTRF AVDVGIRGSM LRELRFKWAG EKLDEVEFYR
201: GLDDKHADAE AGADRAPVPR LTALPKRKGE VKFTMYGLDM SDPKWAEVAE RVAEAEAHFV PEEAKAVEGR AKKAEERLLS VDPRSGDPVP AIEEWKEDLR
301: PNRVDWISLL ERIKARNVEL YLKVAEILLD QESFEANIRD YSKLIDLHAK ANNVESAERV LGKMKEKGIA PDVIISIVLV HMYSRAGKLE QAKEAFDFIR
401: REDFKPDRKL FSSMIKCYIN HGEPEQAENL IKVMRDTRVK PTREIYIGLL RSYVQRGLMA YAERVLKTMS FDRVEPTQEL YTICIEAYGR VGDPKEACAM
501: FDQMRRKFGH EADDSSIAGV VAAYMKNNQL DHALQWLLSL EKEGLQLGVK TNLMLLDWLS MLQLVPEAEQ FVQKIKNLGE EPIEVHVFLA DMYAKSSQED
601: KARRSLKILE EKKKLLKSDQ FERVIRGLVD GGFSEEANKF YKMMKSCGFE PSKTIEVAVK ALRIRGGSHR TGR

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.