Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 5
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29423 | Canola | mitochondrion | 76.0 | 76.74 |
| Bra025746.1-P | Field mustard | mitochondrion | 75.72 | 76.46 |
| CDY39372 | Canola | mitochondrion | 72.0 | 75.98 |
| PGSC0003DMT400038307 | Potato | cytosol | 13.1 | 57.23 |
| Solyc07g025230.1.1 | Tomato | cytosol | 23.17 | 54.19 |
| PGSC0003DMT400013736 | Potato | cytosol | 47.03 | 54.13 |
| Solyc07g025200.1.1 | Tomato | cytosol | 22.9 | 53.55 |
| VIT_18s0001g12630.t01 | Wine grape | mitochondrion | 50.62 | 50.97 |
| KRH05834 | Soybean | mitochondrion | 48.0 | 50.22 |
| KRH15184 | Soybean | mitochondrion | 47.72 | 50.07 |
| GSMUA_Achr3P14510_001 | Banana | mitochondrion | 42.34 | 43.24 |
| Solyc07g025210.1.1 | Tomato | plastid | 21.52 | 41.49 |
| TraesCS6A01G219800.1 | Wheat | mitochondrion | 37.93 | 41.04 |
| TraesCS6B01G249200.1 | Wheat | mitochondrion | 37.79 | 40.9 |
| TraesCS6D01G202700.1 | Wheat | mitochondrion | 37.79 | 40.9 |
| HORVU6Hr1G056180.2 | Barley | mitochondrion | 36.97 | 39.76 |
| EES05410 | Sorghum | mitochondrion | 37.1 | 39.44 |
| Os02t0611400-01 | Rice | mitochondrion | 36.41 | 38.65 |
| Zm00001d017185_P001 | Maize | mitochondrion | 35.72 | 38.48 |
| GSMUA_Achr2P23090_001 | Banana | cytosol | 11.31 | 35.5 |
| GSMUA_AchrUn_... | Banana | cytosol | 8.0 | 33.33 |
| AT1G01970.1 | Thale cress | mitochondrion | 18.21 | 32.27 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:838538 | ProteinID:AAF79432.1 | ProteinID:AEE29864.1 | ArrayExpress:AT1G19520 |
| EnsemblPlantsGene:AT1G19520 | RefSeq:AT1G19520 | TAIR:AT1G19520 | RefSeq:AT1G19520-TAIR-G | EnsemblPlants:AT1G19520.1 | TAIR:AT1G19520.1 |
| EMBL:AY085135 | Unigene:At.21691 | EMBL:BT025250 | ncoils:Coil | GO:GO:0000741 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0006139 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0010197 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030154 | GO:GO:0043231 | GO:GO:0090305 |
| InterPro:IPR002885 | InterPro:IPR011990 | Symbol:NFD5 | RefSeq:NP_001185038.1 | PFAM:PF13812 | PFAM:PF17177 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007057 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| InterPro:PPR_long | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF515 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000A1CF0 | SEG:seg | : | : | : |
Description
NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
Coordinates
chr1:+:6759859..6762847
Molecular Weight (calculated)
82540.3 Da
IEP (calculated)
5.033
GRAVY (calculated)
-0.548
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.