Factsheet for VIT_18s0001g12630.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038307	Potato	cytosol	18.06	78.31
Solyc07g025200.1.1	Tomato	cytosol	32.64	75.81
Solyc07g025230.1.1	Tomato	cytosol	32.36	75.16
PGSC0003DMT400013736	Potato	cytosol	61.39	70.16
KRH15184	Soybean	mitochondrion	56.81	59.19
KRH05834	Soybean	mitochondrion	56.81	59.02
GSMUA_Achr3P14510_001	Banana	mitochondrion	52.92	53.66
CDY39372	Canola	mitochondrion	49.72	52.11
CDY29423	Canola	mitochondrion	51.94	52.09
Bra025746.1-P	Field mustard	mitochondrion	51.81	51.95
AT1G19520.1	Thale cress	mitochondrion	50.97	50.62
Solyc07g025210.1.1	Tomato	plastid	25.97	49.73
Os02t0611400-01	Rice	mitochondrion	41.25	43.48
GSMUA_Achr2P23090_001	Banana	cytosol	13.89	43.29
TraesCS6B01G249200.1	Wheat	mitochondrion	39.44	42.39
TraesCS6A01G219800.1	Wheat	mitochondrion	39.17	42.09
HORVU6Hr1G056180.2	Barley	mitochondrion	39.31	41.99
TraesCS6D01G202700.1	Wheat	mitochondrion	39.03	41.94
Zm00001d017185_P001	Maize	mitochondrion	38.75	41.46
EES05410	Sorghum	mitochondrion	38.75	40.91
VIT_15s0048g00820.t01	Wine grape	cytosol	15.56	40.88
GSMUA_AchrUn_...	Banana	cytosol	9.58	39.66
VIT_15s0048g00810.t01	Wine grape	cytosol	2.78	20.62

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100267767	wikigene:100267767	MapMan:35.1	ProteinID:CCB45954	ProteinID:CCB45954.1
ncoils:Coil	UniProt:F6H052	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100267767	wikigene:LOC100267767	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF515	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000198549A	ArrayExpress:VIT_18s0001g12630
EnsemblPlantsGene:VIT_18s0001g12630	EnsemblPlants:VIT_18s0001g12630.t01	unigene:Vvi.10462	RefSeq:XP_002281331	RefSeq:XP_002281331.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:10818354..10822162

Molecular Weight (calculated)

81656.8 Da

IEP (calculated)

5.004

GRAVY (calculated)

-0.478

Length

720 amino acids

Sequence
(BLAST)

001: MNLKHLLSRQ TIKGLSRFNG RILSPYSYIY KDSFAITTPI SHSIYSSGSY DSTFQNLAYP KLAPSSNRYA HSLPETKLGG SGTDPELESD DSDDGTMNEF
101: LSRFVWIMRG KLMEVYTGCD KQTIDGMLLI IVRKVVSEME KGGLEQMLSA AVAAPSQDFS EDLWKTVWEV SNLVLDDMKK ARNKEKMKGF LQSEEVKEMS
201: RFAGEIGIRG DMLRELRFKW AREKMEESEF YQSLDHLREE AQAEEGEEAV GNEEVIGDDL VEDEKKEKVV SLPKRHGKIR YEIYGLDLSD PKWTEVADKV
301: HEREEIIWPQ EPKPISGKCK LITEKILNMK EEDDPSPLLD EWAELLQPSR IDWITLLDRL KENNSHLYFK VAELVLSKKS FQTNIRDYSK LIDVHAKENR
401: VEDAERILKK MNENDILPDI LTSTVLVHMY SKAGNLERAK EAFEGLRSQG FQPDTRVYNS MIMAYVNAGQ PKLGESLMRE MEARDIKPTK EIYMSLLQSF
501: AQRGDIGGAQ RISTTMQFAG FQPSLESCTL LVEAYGQAGD PDQARNSFDY MIKVGHRPDD RCTASMIAAY EKGNLLDKAL NLLLQLEKDG FEPGVATYVV
601: LVDWLGKMQL VDEAEQLLGK IAEQGEAPPL KFHVSLCDMY SRAGVEKKAL QALGVVEAKK EQLNPEDFER IIKGLIAGGF VQDARRIHGV METQGFTASE
701: QLKIILMSSQ AVGRERPTLR

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.