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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr11P... Banana cytosol 61.31 48.0
PGSC0003DMT400033219 Potato cytosol 66.79 44.1
Solyc01g091450.2.1 Tomato plastid 66.42 43.86
AT1G01970.1 Thale cress mitochondrion 64.96 43.52
CDY15139 Canola plastid 61.68 42.57
Bra033224.1-P Field mustard plastid 62.04 42.18
CDX90067 Canola plastid 61.68 41.94
EER99862 Sorghum plastid 58.03 39.26
Zm00001d022514_P001 Maize plastid 56.2 37.29
TraesCS2D01G128400.1 Wheat plastid 59.49 35.05
Os07t0661900-01 Rice plastid 56.2 35.0
HORVU2Hr1G022100.1 Barley plastid 57.66 34.8
TraesCS2A01G125300.1 Wheat plastid 58.76 34.62
TraesCS2B01G147800.1 Wheat plastid 59.12 34.25
VIT_18s0001g12630.t01 Wine grape mitochondrion 40.88 15.56
VIT_15s0048g00810.t01 Wine grape cytosol 0.36 1.03
Protein Annotations
Gene3D:1.25.40.10EntrezGene:100243847wikigene:100243847MapMan:35.1ProteinID:CCB61391ProteinID:CCB61391.1
UniProt:F6I374EMBL:FN596739GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824
GO:GO:0004518GO:GO:0004519GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009451GO:GO:0009987
GO:GO:0016787GO:GO:0043231GO:GO:0090305InterPro:IPR002885InterPro:IPR011990EntrezGene:LOC100243847
wikigene:LOC100243847PFAM:PF13041PFAM:PF17177InterPro:PPR_longPFscan:PS51375PANTHER:PTHR24015
PANTHER:PTHR24015:SF457InterPro:Pentatricopeptide_repeatTIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfUniParc:UPI000210A83FArrayExpress:VIT_15s0048g00820
EnsemblPlantsGene:VIT_15s0048g00820EnsemblPlants:VIT_15s0048g00820.t01unigene:Vvi.23155RefSeq:XP_002273719RefSeq:XP_002273719.1SEG:seg
Description
No Description!
Coordinates
chr15:+:14980255..14981473
Molecular Weight (calculated)
30671.0 Da
IEP (calculated)
5.525
GRAVY (calculated)
-0.249
Length
274 amino acids
Sequence
(BLAST)
001: MNLGLETSKQ QVAELALLEE SFEANIRDYT KIIDGYGKQN RLQDAENTLS AMKRRGFICD QVTLTAMINM YSKAGNLELA EKTFEEIKLL GHPLDKRSYG
101: SMIMAYIRAG MPDQGEILVK EMEAKEIYAG REVYKALLRA YSNTSDAEGA QRVFDAIQFA GISPDVKLCA LLINAYRVAG QTQKAHVAFE NMRRSGLKPN
201: DKSIALMLAA YEKENKLNKA LDFLIDLERD GIVLGKEASE LLAAWFQRLG VVKEVELVLR EYSAKEASCE VHPS
Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)
001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.