CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90067	Canola	plastid	89.17	87.84
Bra033224.1-P	Field mustard	plastid	88.92	87.59
AT1G01970.1	Thale cress	mitochondrion	71.28	69.19
VIT_15s0048g00820.t01	Wine grape	cytosol	42.57	61.68
KRH00579	Soybean	cytosol	51.39	49.28
KRH40587	Soybean	cytosol	51.39	49.16
GSMUA_Achr11P...	Banana	cytosol	43.07	48.86
Solyc01g091450.2.1	Tomato	plastid	50.13	47.95
PGSC0003DMT400033219	Potato	cytosol	49.87	47.71
EER99862	Sorghum	plastid	43.07	42.22
Zm00001d022514_P001	Maize	plastid	43.07	41.4
Os07t0661900-01	Rice	plastid	42.82	38.64
TraesCS2D01G128400.1	Wheat	plastid	43.32	36.99
HORVU2Hr1G022100.1	Barley	plastid	41.81	36.56
TraesCS2A01G125300.1	Wheat	plastid	42.32	36.13
TraesCS2B01G147800.1	Wheat	plastid	42.82	35.94
CDY39372	Canola	mitochondrion	31.99	18.49
CDY29423	Canola	mitochondrion	32.49	17.97

Protein Annotations

EnsemblPlants:CDY15139	EnsemblPlantsGene:GSBRNA2T00085308001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF457
PFAM:PF01535	PFscan:PS51375	ProteinID:CDY15139	ProteinID:CDY15139.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0004EEAD80	UniProt:A0A078FQJ3	MapMan:35.1	:	:	:

Description

BnaC05g00180DBnaC05g00180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQJ3]

Coordinates

chrLK032052:-:70383..71759

Molecular Weight (calculated)

44757.1 Da

IEP (calculated)

7.223

GRAVY (calculated)

-0.244

Length

397 amino acids

Sequence
(BLAST)

001: MGVYSCNAVL NTVFPFVGGG GSHHRSPKTP FSVEESRRRR FSCKCMMAGE VVDKEEKGPR RFNWVGLTEE QEEEEEAITR IPVKMSKRCQ ALMKQIICFE
101: KGSSFSEMLG AWVRRMKPIR ADWLSLLKEL TNLHSPFYIK VAEFALLEDS FEANPRDYTK IIHYYGKLNQ IQDAENTLVS MKNRGFLIDQ VTLTAMVQSY
201: SKAGYHLLAE ETFNDIKLLG EPLDYRSYGS MIMAYIRAGT PEKGEALLRE MDSHDLCAGR EVYKALLRAY SMSGDPQGSK RVFDALQIAG ITPDAKLCGL
301: LINAHSVSGQ SHNARLAFEN MRKAGIKATD KCVALVLSAY QMEEKLNEAL GFLVELEKDS IMVGEEASAV LARWFKKLGV VEEVELLLRE FSSHKTL

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.