CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033224.1-P	Field mustard	plastid	99.26	99.26
CDY15139	Canola	plastid	87.84	89.17
AT1G01970.1	Thale cress	mitochondrion	72.7	71.64
VIT_15s0048g00820.t01	Wine grape	cytosol	41.94	61.68
KRH40587	Soybean	cytosol	52.11	50.6
KRH00579	Soybean	cytosol	51.61	50.24
PGSC0003DMT400033219	Potato	cytosol	51.36	49.88
Solyc01g091450.2.1	Tomato	plastid	51.36	49.88
GSMUA_Achr11P...	Banana	cytosol	42.68	49.14
EER99862	Sorghum	plastid	43.18	42.96
Zm00001d022514_P001	Maize	plastid	43.92	42.86
Os07t0661900-01	Rice	plastid	43.67	40.0
TraesCS2D01G128400.1	Wheat	plastid	43.67	37.85
HORVU2Hr1G022100.1	Barley	plastid	42.18	37.44
TraesCS2A01G125300.1	Wheat	plastid	42.68	36.99
TraesCS2B01G147800.1	Wheat	plastid	43.18	36.79
CDY39372	Canola	mitochondrion	31.51	18.49
CDY29423	Canola	mitochondrion	32.01	17.97

Protein Annotations

EnsemblPlants:CDX90067	EnsemblPlantsGene:GSBRNA2T00150576001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF457
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX90067	ProteinID:CDX90067.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EE62F5	MapMan:35.1	:	:	:

Description

BnaA10g00150D

Coordinates

chrLK031861:+:1514506..1516067

Molecular Weight (calculated)

45593.2 Da

IEP (calculated)

8.006

GRAVY (calculated)

-0.244

Length

403 amino acids

Sequence
(BLAST)

001: MMGVYSCNAV LNSVFPFVGG GGSHHKLYFS PKTPFSVEES RHRFSCKCRM AMEVVDKEEK GPPRRFNWVD LNSHHITEEQ EEAITRIPVK MSKRCQALMK
101: QIICFEKGSS FSDMLGAWVR RMKPIRADWL SLLKELNNLH SPFYIKVAEF ALLEDSFEAN PRDYTKIIHY YGKLNQIQEA EKTLVSMKSR GFLIDQVTLT
201: AMVQSYSKAG FHRLAEETFN DIKLLGEPLD YRSYGSMIMA YIRAGTPEKG EALLREMDSH DICAGREVYK ALLRSYSMSG DPQGSKRVFD ALQIAGITPD
301: AKLCGLLINA YSVSGQSQNA RLAFENMRKA GIKATDKCVA LVLSAYQNEE KLNEALGFLV ELEKDSIMVG EEASAVLARW FKKLGVVEEV ELLLREFSSH
401: KTL

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.