Factsheet for Bra033224.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90067	Canola	plastid	99.26	99.26
CDY15139	Canola	plastid	87.59	88.92
AT1G01970.1	Thale cress	mitochondrion	73.2	72.13
VIT_15s0048g00820.t01	Wine grape	cytosol	42.18	62.04
KRH40587	Soybean	cytosol	52.61	51.08
KRH00579	Soybean	cytosol	52.11	50.72
Solyc01g091450.2.1	Tomato	plastid	51.61	50.12
PGSC0003DMT400033219	Potato	cytosol	51.61	50.12
GSMUA_Achr11P...	Banana	cytosol	43.18	49.71
EER99862	Sorghum	plastid	43.42	43.21
Zm00001d022514_P001	Maize	plastid	44.17	43.1
Os07t0661900-01	Rice	plastid	43.92	40.23
TraesCS2D01G128400.1	Wheat	plastid	43.67	37.85
HORVU2Hr1G022100.1	Barley	plastid	41.94	37.22
TraesCS2B01G147800.1	Wheat	plastid	43.18	36.79
TraesCS2A01G125300.1	Wheat	plastid	42.43	36.77
Bra025746.1-P	Field mustard	mitochondrion	32.26	18.11

Protein Annotations

EnsemblPlants:Bra033224.1	EnsemblPlants:Bra033224.1-P	EnsemblPlantsGene:Bra033224	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF457	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0002543726	UniProt:M4EWP0	MapMan:35.1	:	:	:

Description

AT1G01970 (E=4e-164) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA10:+:4799502..4800782

Molecular Weight (calculated)

45597.2 Da

IEP (calculated)

7.780

GRAVY (calculated)

-0.229

Length

403 amino acids

Sequence
(BLAST)

001: MMGVYSCNAV LNSVFPFVGG GGSHHKLYFS PKTPFSVEES RHRFSCKCRM AMEVVDKEEK GPPRRFNWVD VNSHHITEEQ EEAITRIPVK MSKRCQALMK
101: QIICFEKGSS FSDMLGAWVR RMKPIRADWL SLLKELNNLH SPFYIKVAEF ALLEDSFEAN PRDYTKIIHY YGKLNQIQEA EKTLVSMKSR GFLIDQVTLT
201: AMVQSYSKAG FHRLAEETFN DIKLLGEPLD YRSYGSMIMA YIRAGTPEKG EALLREMDSH DICAGREVYK ALLRSYSMSG DPQGSKRVFD ALQIAGITPD
301: AKLCGLLINA YSVSGQSQNA RLAFENMRKA GIKATDKCVA LVLSAYEMEE KLNEALGFLV ELEKDSIMVG EEASAVLARW FKKLGVVEEV ELLLREFSSH
401: KTL

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.