Factsheet for HORVU2Hr1G022100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G128400.1	Wheat	plastid	81.28	79.35
TraesCS2A01G125300.1	Wheat	plastid	80.62	78.71
TraesCS2B01G147800.1	Wheat	plastid	78.19	75.05
EER99862	Sorghum	plastid	62.33	69.88
Zm00001d022514_P001	Maize	plastid	61.67	67.8
Os07t0661900-01	Rice	plastid	64.76	66.82
GSMUA_Achr11P...	Banana	cytosol	45.59	59.14
VIT_15s0048g00820.t01	Wine grape	cytosol	34.8	57.66
PGSC0003DMT400033219	Potato	cytosol	40.53	44.34
Solyc01g091450.2.1	Tomato	plastid	40.31	44.1
AT1G01970.1	Thale cress	mitochondrion	38.77	43.03
KRH00579	Soybean	cytosol	38.99	42.75
CDX90067	Canola	plastid	37.44	42.18
KRH40587	Soybean	cytosol	38.55	42.17
Bra033224.1-P	Field mustard	plastid	37.22	41.94
CDY15139	Canola	plastid	36.56	41.81
VIT_15s0048g00810.t01	Wine grape	cytosol	8.15	38.14
HORVU6Hr1G056180.2	Barley	mitochondrion	24.01	16.17

Protein Annotations

EnsemblPlants:HORVU2Hr1G022100.1	EnsemblPlantsGene:HORVU2Hr1G022100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF457
PFAM:PF01535	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002953400	UniProt:M0YBT5
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:63475739..63477792

Molecular Weight (calculated)

50076.4 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.265

Length

454 amino acids

Sequence
(BLAST)

001: MASLAAPAFH SLAAQISRAS TARASSQCVT APGRRGARAR PRAAETAQAA AAETPRFRWD ELGTGLSDPQ EQAMRGLSPK LPNRCRALMP RVVSLSPGDE
101: NLGVVLAFWV KAMKPKRADW LLVLKELKAM ESPLLAEVLE YVLLEDSFEA NVRDYTKLIQ IYGKQNLLRE AEEAFHAMKA RGLPCDQVML TALVDMYSKA
201: GDLTRAKETF KEIVLLGLPL DKRAYGSMIM AYIRADMLDQ ADDLIKQTED QQVFAGKEVY KALLRAYSYR GDSEGAQRVF DAVQFAGTVP DTKLCALLVN
301: AYCLSNRIDE AVCVTRNMRS AGLEPCDRCV ALILGAYENA DRLEGALEFL AELEENGVVI GQEPSQLLAA WFGRLGVVHE VEQVLEEVGK SGKSKQSSSV
401: LKEGVKSRMS VHSVSVQKEW RRGSRSTHSI SVQKKRTTNR KSKHNSSPSP LQLK

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.