Factsheet for TraesCS2A01G125300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G128400.1	Wheat	plastid	95.05	95.05
TraesCS2B01G147800.1	Wheat	plastid	90.32	88.79
HORVU2Hr1G022100.1	Barley	plastid	78.71	80.62
EER99862	Sorghum	plastid	60.86	69.88
Zm00001d022514_P001	Maize	plastid	60.22	67.8
Os07t0661900-01	Rice	plastid	61.72	65.23
GSMUA_Achr11P...	Banana	cytosol	44.73	59.43
VIT_15s0048g00820.t01	Wine grape	cytosol	34.62	58.76
PGSC0003DMT400033219	Potato	cytosol	41.29	46.27
Solyc01g091450.2.1	Tomato	plastid	40.86	45.78
AT1G01970.1	Thale cress	mitochondrion	38.28	43.52
KRH00579	Soybean	cytosol	38.06	42.75
CDX90067	Canola	plastid	36.99	42.68
Bra033224.1-P	Field mustard	plastid	36.77	42.43
CDY15139	Canola	plastid	36.13	42.32
KRH40587	Soybean	cytosol	37.63	42.17
VIT_15s0048g00810.t01	Wine grape	cytosol	8.17	39.18
TraesCS6A01G219800.1	Wheat	mitochondrion	24.52	17.01

Protein Annotations

EnsemblPlants:TraesCS2A01G125300.1	EnsemblPlantsGene:TraesCS2A01G125300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF457	PFAM:PF01535	PFAM:PF17177	PFscan:PS51375	SEG:seg
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:74106445..74108304

Molecular Weight (calculated)

51437.9 Da

IEP (calculated)

8.121

GRAVY (calculated)

-0.288

Length

465 amino acids

Sequence
(BLAST)

001: MVSLAAPAFH SLASQASRAC TTRAYSQCES APGRRGAKAR PRAAGTEQAA AVEAEETPRF SWDELGSDLS EPQEQAMRGL SPKLPNRCRA LMPRVVSLSP
101: GDENLGVVLA FWVKAMKPKR ADWLLVLKEL KAMESPLLAE VLEYALLEDS FEANVRDYTK LMQIYGKQNL LREAEEAFQA MKARGLPCDQ VMLTALVDMY
201: SKAGDLTRAN ETFEEIVLLG LPLDKRAYGS MIMAYIRADM LDQAEDLIKQ TEDQQVFAGK EVYKALLRAY SYKGDSEGAQ RVFDAVQFAG TVPDTKLCAL
301: LVNAYCLSNR IDEAVCVTRN MRSVGLEPCD RCVTLILGAY DKANKLEGAL EFLAELEENG VVIGQEPSQL LAAWFGRLGV VHEVEQVLEE VSKSSKSKQS
401: VSLLKEGTKS WKSKDRVKKE WRKGKKSKHS ISVHQQPSIS VQTKGATNRK SKITRSITSA TEVIL

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.