Factsheet for AT1G01970.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033224.1-P	Field mustard	plastid	72.13	73.2
CDX90067	Canola	plastid	71.64	72.7
CDY15139	Canola	plastid	69.19	71.28
VIT_15s0048g00820.t01	Wine grape	cytosol	43.52	64.96
KRH40587	Soybean	cytosol	54.52	53.73
KRH00579	Soybean	cytosol	54.28	53.62
GSMUA_Achr11P...	Banana	cytosol	44.01	51.43
Solyc01g091450.2.1	Tomato	plastid	51.34	50.6
PGSC0003DMT400033219	Potato	cytosol	51.1	50.36
EER99862	Sorghum	plastid	44.25	44.69
Zm00001d022514_P001	Maize	plastid	44.5	44.07
Os07t0661900-01	Rice	plastid	43.52	40.45
TraesCS2D01G128400.1	Wheat	plastid	44.5	39.14
HORVU2Hr1G022100.1	Barley	plastid	43.03	38.77
TraesCS2A01G125300.1	Wheat	plastid	43.52	38.28
TraesCS2B01G147800.1	Wheat	plastid	43.77	37.84
AT1G19520.1	Thale cress	mitochondrion	32.27	18.21

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:839299	UniProt:A0A178W583	ProteinID:AAF76475.1	ProteinID:AEE27361.1
EMBL:AK227853	ArrayExpress:AT1G01970	EnsemblPlantsGene:AT1G01970	RefSeq:AT1G01970	TAIR:AT1G01970	RefSeq:AT1G01970-TAIR-G
EnsemblPlants:AT1G01970.1	TAIR:AT1G01970.1	Unigene:At.42625	EMBL:BT010352	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	RefSeq:NP_171699.1	ProteinID:OAP12851.1	PFAM:PF01535	PFAM:PF13812	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF457	InterPro:Pentatricopeptide_repeat	UniProt:Q9LPC4	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00000A89F8	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]

Coordinates

chr1:+:338241..340088

Molecular Weight (calculated)

46080.0 Da

IEP (calculated)

6.954

GRAVY (calculated)

-0.120

Length

409 amino acids

Sequence
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.