Factsheet for Solyc01g091450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033219	Potato	cytosol	95.18	95.18
VIT_15s0048g00820.t01	Wine grape	cytosol	43.86	66.42
GSMUA_Achr11P...	Banana	cytosol	46.51	55.14
KRH00579	Soybean	cytosol	53.73	53.86
KRH40587	Soybean	cytosol	53.49	53.49
Bra033224.1-P	Field mustard	plastid	50.12	51.61
VIT_15s0048g00810.t01	Wine grape	cytosol	12.05	51.55
CDX90067	Canola	plastid	49.88	51.36
AT1G01970.1	Thale cress	mitochondrion	50.6	51.34
CDY15139	Canola	plastid	47.95	50.13
EER99862	Sorghum	plastid	46.51	47.65
Zm00001d022514_P001	Maize	plastid	46.02	46.25
Os07t0661900-01	Rice	plastid	44.82	42.27
TraesCS2D01G128400.1	Wheat	plastid	46.02	41.08
TraesCS2A01G125300.1	Wheat	plastid	45.78	40.86
HORVU2Hr1G022100.1	Barley	plastid	44.1	40.31
TraesCS2B01G147800.1	Wheat	plastid	45.3	39.75
Solyc07g025200.1.1	Tomato	cytosol	19.76	26.45
Solyc07g025230.1.1	Tomato	cytosol	19.28	25.81
Solyc07g025210.1.1	Tomato	plastid	5.78	6.38

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4AZ85
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF457	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:Solyc01g091450.2	EnsemblPlants:Solyc01g091450.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00027681E9	SEG:seg

Description

No Description!

Coordinates

chr1:-:85060559..85065801

Molecular Weight (calculated)

46504.7 Da

IEP (calculated)

8.288

GRAVY (calculated)

-0.112

Length

415 amino acids

Sequence
(BLAST)

001: MGFVASGVLC CSTQTSIRSN TIGRINQYPS KGVFFLQKVT SFENRELGFK PLLAVSNVAV NQKSSAENQV NDKPRYRWVK IGSDVTEEQQ RAILKLPPKM
101: INRCKALMQQ IICYSPEKGS VSLLLEAWVK SMKPDRADWL AVLKELDRLN HPMYLEVAEL SLLAESFEAN IRDYTKIIHG YAKQNRLKEA ESVFLSMKSR
201: GFTCDQVTLT ALVHMYSKAS NLKLAEDTFE EMRLLGVPLD KRSFGSIIMA YVRAGKLGQG EALLKEMEEQ ETYAGPEVYK ALLRAYSMSG DSKGAQRVFD
301: TIQLAGVIPD ATICGLLMNA YIMAGQLSET CIAFENMRRV GIKPNDKCIT LLLTAYETEN KLSKALDVLM DLERDGIVLG REASELLARW FKRLGVVGEV
401: ELVLRDYASN CTLLN

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.