Factsheet for GSMUA_Achr11P20290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g00820.t01	Wine grape	cytosol	48.0	61.31
EER99862	Sorghum	plastid	60.0	51.85
Zm00001d022514_P001	Maize	plastid	60.29	51.09
VIT_15s0048g00810.t01	Wine grape	cytosol	14.0	50.52
KRH00579	Soybean	cytosol	56.57	47.83
PGSC0003DMT400033219	Potato	cytosol	56.0	47.23
KRH40587	Soybean	cytosol	55.43	46.75
Os07t0661900-01	Rice	plastid	58.57	46.59
Solyc01g091450.2.1	Tomato	plastid	55.14	46.51
HORVU2Hr1G022100.1	Barley	plastid	59.14	45.59
TraesCS2D01G128400.1	Wheat	plastid	59.71	44.95
TraesCS2A01G125300.1	Wheat	plastid	59.43	44.73
TraesCS2B01G147800.1	Wheat	plastid	59.71	44.19
AT1G01970.1	Thale cress	mitochondrion	51.43	44.01
Bra033224.1-P	Field mustard	plastid	49.71	43.18
CDY15139	Canola	plastid	48.86	43.07
CDX90067	Canola	plastid	49.14	42.68
GSMUA_Achr2P23090_001	Banana	cytosol	14.86	22.51
GSMUA_Achr3P14510_001	Banana	mitochondrion	36.86	18.17
GSMUA_AchrUn_...	Banana	cytosol	7.71	15.52

Protein Annotations

EnsemblPlants:GSMUA_Achr11P20290_001	EnsemblPlants:GSMUA_Achr11T20290_001	EnsemblPlantsGene:GSMUA_Achr11G20290_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR24015	PANTHER:PTHR24015:SF457	PFAM:PF13041	PFAM:PF17177	PFscan:PS51375	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI000295235C	UniProt:M0RTV9	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:GMGC_GENE;Acc:GSMUA_Achr11G20290_001]

Coordinates

chr11:-:21297656..21300480

Molecular Weight (calculated)

39747.5 Da

IEP (calculated)

6.410

GRAVY (calculated)

-0.084

Length

350 amino acids

Sequence
(BLAST)

001: MNVGPDLTED QKKAISQLPL KMSNRCKALM KRLICFSPDA DDLSLLLAAW VKVMKPRRAD WLAILKEIKR MENPLLFEVM EYALLENSFE ANVRDYTKLI
101: DLYAKQNLLE NAENSFQAMI KRGFPCDQVT LTVLIHMYSK AGHLDRAKEA FEEIKLLGLP LDKRAYGSML MAYIRAEMLE HAERLMKEME EQEFYASKEV
201: YKALLRAYST NGNADGAQRV FNSIQFAGIV PDSRLCALLI NAYCMAGQSS KAHSVLENMR IAGLEPSDRC IALMLGAYER ENNLDAALSF LIELEHNGVL
301: IADEASQVLV GWFRRLGVVG EVQQVLREFV VEGAGSFTPY YISKRYVHHI

Best Arabidopsis Sequence Match ( AT1G01970.1 )
(BLAST)

001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g01970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.