Factsheet for Solyc07g025200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g025230.1.1	Tomato	cytosol	97.1	97.1
PGSC0003DMT400013736	Potato	cytosol	97.1	47.78
VIT_18s0001g12630.t01	Wine grape	mitochondrion	75.81	32.64
KRH15184	Soybean	mitochondrion	60.32	27.06
KRH05834	Soybean	mitochondrion	58.71	26.26
GSMUA_Achr3P14510_001	Banana	mitochondrion	60.0	26.2
CDY39372	Canola	mitochondrion	54.52	24.6
Bra025746.1-P	Field mustard	mitochondrion	54.84	23.68
CDY29423	Canola	mitochondrion	54.84	23.68
AT1G19520.1	Thale cress	mitochondrion	53.55	22.9
TraesCS6A01G219800.1	Wheat	mitochondrion	46.13	21.34
TraesCS6B01G249200.1	Wheat	mitochondrion	46.13	21.34
TraesCS6D01G202700.1	Wheat	mitochondrion	46.13	21.34
HORVU6Hr1G056180.2	Barley	mitochondrion	44.84	20.62
EES05410	Sorghum	mitochondrion	43.55	19.79
Os02t0611400-01	Rice	mitochondrion	43.55	19.77
Zm00001d017185_P001	Maize	mitochondrion	42.9	19.76
Solyc01g091450.2.1	Tomato	plastid	26.45	19.76
GSMUA_Achr2P23090_001	Banana	cytosol	8.39	11.26
GSMUA_AchrUn_...	Banana	cytosol	1.94	3.45
Solyc07g025210.1.1	Tomato	plastid	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
UniProt:K4CD71	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF515
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc07g025200.1	EnsemblPlants:Solyc07g025200.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000276ABFC	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:26687693..26688625

Molecular Weight (calculated)

34727.0 Da

IEP (calculated)

5.276

GRAVY (calculated)

-0.270

Length

310 amino acids

Sequence
(BLAST)

001: MRENGIVPDI LTSTTMVHMY SKAGDLDRAK AAFESLRTQG FLPDMGVYNS MILAYVNAGD PKKGESLMKE MEVRDMKSSK KIYMALLRSF SQHGDANGAQ
101: RIATSMQFSG FQPTLESCML LVEAFGKAGD PDQARQNFDY MIKLGHKPND RCTATMIAAY EKNNLLDKAL NLLVELEKDG FEPGVATYSV LVDWLSKMQL
201: IDEAEQLLDK IAEQGEAPPF KVHISLCDMY ARANVEKKAL QALGVLEAKQ EQLEPEDFER IIWSLIAGGF VQDAQKFQGL MEARGFTVSE QLQVTLMASQ
301: TFLRRRPTVR

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.