CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025746.1-P	Field mustard	mitochondrion	98.89	98.89
CDY39372	Canola	mitochondrion	86.49	90.39
AT1G19520.1	Thale cress	mitochondrion	76.74	76.0
PGSC0003DMT400038307	Potato	cytosol	13.37	57.83
PGSC0003DMT400013736	Potato	cytosol	48.75	55.56
Solyc07g025230.1.1	Tomato	cytosol	23.96	55.48
Solyc07g025200.1.1	Tomato	cytosol	23.68	54.84
VIT_18s0001g12630.t01	Wine grape	mitochondrion	52.09	51.94
KRH05834	Soybean	mitochondrion	49.16	50.94
KRH15184	Soybean	mitochondrion	48.89	50.8
Solyc07g025210.1.1	Tomato	plastid	22.56	43.09
GSMUA_Achr3P14510_001	Banana	mitochondrion	42.48	42.96
TraesCS6A01G219800.1	Wheat	mitochondrion	39.28	42.09
TraesCS6B01G249200.1	Wheat	mitochondrion	39.28	42.09
TraesCS6D01G202700.1	Wheat	mitochondrion	39.28	42.09
Os02t0611400-01	Rice	mitochondrion	39.14	41.14
HORVU6Hr1G056180.2	Barley	mitochondrion	38.3	40.8
EES05410	Sorghum	mitochondrion	37.6	39.59
Zm00001d017185_P001	Maize	mitochondrion	36.49	38.93
GSMUA_AchrUn_...	Banana	cytosol	8.36	34.48
GSMUA_Achr2P23090_001	Banana	cytosol	11.0	34.2
CDY15139	Canola	plastid	17.97	32.49
CDX90067	Canola	plastid	17.97	32.01

Protein Annotations

EnsemblPlants:CDY29423	EnsemblPlantsGene:GSBRNA2T00043021001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF515	PFAM:PF13812	PFAM:PF17177	PFscan:PS51375	ProteinID:CDY29423	ProteinID:CDY29423.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EEED89	UniProt:A0A078GXU5	MapMan:35.1	:

Description

BnaA06g13730DBnaA06g13730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXU5]

Coordinates

chrLK032236:-:431869..434509

Molecular Weight (calculated)

81409.0 Da

IEP (calculated)

5.407

GRAVY (calculated)

-0.525

Length

718 amino acids

Sequence
(BLAST)

001: MKSLLLSRQA IRRISLSSSK TPPFFGNFSA AAPSISRSDR HLRSYDEPIP RPVTSSFTRH FHSTRESRLS DSTASSQIHE EEEDDGTTNE FLSRFVWIMR
101: GKVSEAFPDS DKKMVDGMLL LIVEKVVAEI ERGGFSKVGG SSSSAPPPSP SSEFSDDLWA TIWEVSNTVL KDMEKERKKE KMKVYVQSPE VMEMCRFAGE
201: IGIRGDLLRE LRFTWAREKM EEAEFNESLE HMRDLDGSIR ESETVDADEE GEESVVDSDE VQPRSISLPK RKGKFKYKIY GLELSDPKWG EVADKIHEAE
301: EEADWREAKP VTGKCKLVME KLESLEEKDD PSGLIAEWVE LLEPQRVDWI ALLDQLRDAN TNAYLKVAEH VLDDKSFRAS ISDYSKLIHI HAKENHTEAV
401: ERILKKMSQN GIFPDISIAT ALIHLYSKSG NLERATEAFE SLKSYGLRPD NKIYTSMIMG YVNAGKPKLG ERLMRDMDAR DMKCSDEVYM AMLRAFAQTG
501: DADGAAGIFN SMQLDFKDTN CFEAYGLLVE AYGRAGKADK AKINFDQMRT RGFKPDDKCI ANMIRAYKRE NSLDKALRLL LQLEKDGIEI GVITYTVLVD
601: WMATLGLIEE AEQLLVKISQ LGEAPPFELQ VSLCYMYSTA RNEKKTLQAL GVLEAKRDQM GPNEFERVIT GLKTGGFEKD ARRMFKHMEA RKFLPSDRLK
701: IDMGASPSFG SGFNRVRR

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.