Factsheet for PGSC0003DMT400038307

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013736	Potato	cytosol	92.17	24.29
VIT_18s0001g12630.t01	Wine grape	mitochondrion	78.31	18.06
KRH15184	Soybean	mitochondrion	69.28	16.64
KRH05834	Soybean	mitochondrion	68.07	16.31
GSMUA_Achr3P14510_001	Banana	mitochondrion	65.06	15.21
CDY39372	Canola	mitochondrion	57.83	13.97
Bra025746.1-P	Field mustard	mitochondrion	57.83	13.37
CDY29423	Canola	mitochondrion	57.83	13.37
AT1G19520.1	Thale cress	mitochondrion	57.23	13.1
TraesCS6A01G219800.1	Wheat	mitochondrion	51.2	12.69
TraesCS6B01G249200.1	Wheat	mitochondrion	51.2	12.69
TraesCS6D01G202700.1	Wheat	mitochondrion	50.6	12.54
Os02t0611400-01	Rice	mitochondrion	49.4	12.01
HORVU6Hr1G056180.2	Barley	mitochondrion	48.19	11.87
EES05410	Sorghum	mitochondrion	46.39	11.29
PGSC0003DMT400033219	Potato	cytosol	27.71	11.08
Zm00001d017185_P001	Maize	mitochondrion	43.98	10.85
GSMUA_Achr2P23090_001	Banana	cytosol	10.84	7.79
GSMUA_AchrUn_...	Banana	cytosol	3.01	2.87

Protein Annotations

EnsemblPlants:PGSC0003DMT400038307	EnsemblPlantsGene:PGSC0003DMG400014782	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF515	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PGSC:PGSC0003DMG400014782	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI000296AEB7	UniProt:M1B6M0	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014782]

Coordinates

chr8:+:44345535..44347046

Molecular Weight (calculated)

18514.4 Da

IEP (calculated)

4.270

GRAVY (calculated)

-0.139

Length

166 amino acids

Sequence
(BLAST)

001: MSENEIVLDI LTSTTMVQMY SKAGDLDRAN AAFESLRTQG FLPDMGVYNS MILAYVNDGD PKKDDRCTAS MIVAYEKKNL LDKALNLLME LEKDVFEPGV
101: ATYSVLVDWL GKMQLIDEAE QLLDKIAEQG EAPPFKVHIS LCDMYARANV EKKAIQALGV LEAKQE

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.