Factsheet for HORVU6Hr1G056180.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G219800.1	Wheat	mitochondrion	92.28	92.84
TraesCS6B01G249200.1	Wheat	mitochondrion	91.99	92.54
TraesCS6D01G202700.1	Wheat	mitochondrion	91.39	91.94
Os02t0611400-01	Rice	mitochondrion	68.84	67.94
EES05410	Sorghum	mitochondrion	67.21	66.42
Zm00001d017185_P001	Maize	mitochondrion	65.28	65.38
PGSC0003DMT400038307	Potato	cytosol	11.87	48.19
GSMUA_Achr3P14510_001	Banana	mitochondrion	48.37	45.92
Solyc07g025230.1.1	Tomato	cytosol	20.77	45.16
Solyc07g025200.1.1	Tomato	cytosol	20.62	44.84
GSMUA_Achr2P23090_001	Banana	cytosol	14.99	43.72
PGSC0003DMT400013736	Potato	cytosol	39.76	42.54
CDY39372	Canola	mitochondrion	40.21	39.45
VIT_18s0001g12630.t01	Wine grape	mitochondrion	41.99	39.31
Bra025746.1-P	Field mustard	mitochondrion	40.95	38.44
KRH05834	Soybean	mitochondrion	39.47	38.38
CDY29423	Canola	mitochondrion	40.8	38.3
KRH15184	Soybean	mitochondrion	39.17	38.21
GSMUA_AchrUn_...	Banana	cytosol	9.64	37.36
AT1G19520.1	Thale cress	mitochondrion	39.76	36.97
Solyc07g025210.1.1	Tomato	plastid	16.91	30.32
HORVU2Hr1G022100.1	Barley	plastid	16.17	24.01

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287U993	ncoils:Coil	GO:GO:0000741	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0010197
GO:GO:0016043	GO:GO:0030154	EnsemblPlantsGene:HORVU6Hr1G056180	EnsemblPlants:HORVU6Hr1G056180.2	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF515	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B47F61D	SEG:seg

Description

No Description!

Coordinates

chrchr6H:-:360335321..360339951

Molecular Weight (calculated)

75735.7 Da

IEP (calculated)

6.597

GRAVY (calculated)

-0.385

Length

674 amino acids

Sequence
(BLAST)

001: MRALLSLSKL ARRLPTPLPA TRVAAPLLQR HLHADTAPPP QTPPPFASRI LQSEESPPPS TELEHAQPAP DPVLDEFLAR LVTALRPTLA AAFPTHTRLV
101: LDEMLRLIAE AVLNSLSGAD PGPDTVELSD DLWAAVWEVS ASVREAMRRD QVRADLRNYL HSDDVKEMTR FAVDVGIRGA MLRELRFKWA REKLEEVEFY
201: RGLDVMHQQA DADAADSPAA PPPARLTALP QRKGEVKFKI SGLDLSDPKW AEVAERAAES EAHFVPEEAK AVDGKAKKAE EQLLAVEPRK GNPIPAMEEW
301: KEELRPKRVD WLALLERVKA RNVELYLKIA EILLDEDSFA ANIRDYSKLI DLHSKATHVL DAERILGKMK EKDIAPDILT SITLVHMYSK SGNLEQATRA
401: FDFIEKEGLQ PDTRLFTSMI SACINAGVPK QAEKLLKKMD ELSMKPSREL YMDVMRAYAE RNLVDGAQMM RTQMSMAGIE PTLECFTLLI EAYGRAGNPD
501: PAYEAFEQMR KNGHEPDDRC LAGMMTGLMK TNQLDQALKL LLSLKEGVKP GVKTNLVLLD WLSMLQLVQE AEQLVQKIRK AGEEPLEIHV YLADMYAKSR
601: QEEKARKSLK ILEEKKRLLK ADHFERIIRG LQQGGFWEDA KKYFKMMKSR GFVPSATVEA GVRGVVPPAG RYQG

Best Arabidopsis Sequence Match ( AT1G19520.1 )
(BLAST)

001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS

Arabidopsis Description

NFD5pentatricopeptide (PPR) repeat-containing protein [Source:TAIR;Acc:AT1G19520]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.