Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g071160.2.1 | |
| Solyc06g060490.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43700.1 | Solyc04g071160.2.1 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | Solyc06g060490.2.1 | AT1G43700.1 | 15824315 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045314 | Potato | nucleus | 97.47 | 82.82 |
| Solyc04g071160.2.1 | Tomato | nucleus | 77.26 | 62.76 |
| TraesCS5B01G124200.1 | Wheat | nucleus | 54.87 | 54.29 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 37.55 | 52.0 |
| CDY48943 | Canola | nucleus | 43.68 | 50.21 |
| Os11t0160500-01 | Rice | nucleus, plasma membrane | 42.24 | 49.58 |
| VIT_18s0076g00330.t01 | Wine grape | nucleus | 62.45 | 49.43 |
| Bra034916.1-P | Field mustard | nucleus, plastid | 46.21 | 48.67 |
| KRH70316 | Soybean | nucleus | 56.32 | 47.27 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 49.82 | 47.1 |
| HORVU4Hr1G020540.1 | Barley | nucleus | 54.51 | 46.75 |
| Zm00001d041920_P001 | Maize | nucleus | 53.79 | 46.42 |
| EES08023 | Sorghum | nucleus | 56.68 | 46.18 |
| Zm00001d053162_P003 | Maize | nucleus | 56.32 | 46.15 |
| Os12t0162500-01 | Rice | plasma membrane | 54.51 | 46.04 |
| TraesCS4B01G113400.1 | Wheat | nucleus | 54.51 | 45.9 |
| TraesCS4D01G110900.1 | Wheat | nucleus | 54.51 | 45.76 |
| CDX80722 | Canola | nucleus | 53.07 | 45.65 |
| TraesCS5D01G132300.1 | Wheat | nucleus | 54.51 | 45.48 |
| TraesCS5A01G124600.1 | Wheat | nucleus | 54.51 | 45.48 |
| AT1G43700.1 | Thale cress | nucleus | 55.96 | 45.45 |
| TraesCS4A01G209900.1 | Wheat | nucleus | 54.15 | 45.32 |
| Zm00001d004857_P001 | Maize | nucleus | 56.68 | 44.86 |
| Bra032191.1-P | Field mustard | nucleus | 53.07 | 44.55 |
| CDY30752 | Canola | nucleus | 53.07 | 44.55 |
| EES15709 | Sorghum | nucleus | 55.96 | 44.41 |
| GSMUA_Achr10P... | Banana | nucleus | 50.18 | 44.41 |
| CDY71925 | Canola | nucleus | 40.43 | 44.09 |
| HORVU5Hr1G039870.5 | Barley | nucleus, plastid | 54.15 | 42.02 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 42.96 | 41.9 |
| GSMUA_Achr10P... | Banana | nucleus | 48.38 | 39.88 |
| Zm00001d023507_P001 | Maize | nucleus, plastid | 54.15 | 37.69 |
| Solyc06g049040.2.1 | Tomato | nucleus | 40.79 | 34.14 |
| KRH08713 | Soybean | nucleus | 51.62 | 33.57 |
| Solyc06g048630.2.1 | Tomato | nucleus | 41.52 | 32.95 |
| Solyc06g053350.2.1 | Tomato | plastid | 46.21 | 29.49 |
| Solyc04g081190.2.1 | Tomato | nucleus | 36.82 | 22.97 |
| Solyc07g053450.2.1 | Tomato | nucleus | 22.38 | 21.83 |
| Solyc07g062710.2.1 | Tomato | nucleus, plastid | 22.38 | 20.53 |
| Solyc12g010800.1.1 | Tomato | nucleus | 21.66 | 19.61 |
| Solyc01g110480.2.1 | Tomato | nucleus | 40.79 | 19.42 |
| Solyc11g006490.1.1 | Tomato | nucleus | 16.97 | 15.31 |
| Solyc11g020950.1.1 | Tomato | nucleus | 17.33 | 14.72 |
| Solyc10g044830.1.1 | Tomato | nucleus | 10.83 | 12.15 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | UniProt:K4C6M9 | PFAM:PF00170 | PFscan:PS50217 | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF86 |
| SMART:SM00338 | SUPFAM:SSF57959 | EnsemblPlantsGene:Solyc06g060490.2 | EnsemblPlants:Solyc06g060490.2.1 | UniParc:UPI0002766165 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:38513084..38518925
Molecular Weight (calculated)
30865.1 Da
IEP (calculated)
6.814
GRAVY (calculated)
-0.766
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKFAGKPI QAQFYSGQTN LEQMQDTPTR GARHRRAQSE TFFRFPSFDD DMLLDDVVSD FSLDVQAPTL MQPANSPDSS STGPALSAGP SDYPKPLAHY
101: RSLSVDADFF DGLDFGGVPT EKKLMGSEPR HRHSNSMDGS FDTSSFESES ISVKKAMAPD RLAELSLIDP KRAKRILANR QSAARSKERK TRYTSELERK
201: VQTLQTEATT LSAQITVLQR DTSGLNAENK ELKFRLQALE QQAHLRDALN DTLREELQRL KIEAGQLPSA NGNRGMH
101: RSLSVDADFF DGLDFGGVPT EKKLMGSEPR HRHSNSMDGS FDTSSFESES ISVKKAMAPD RLAELSLIDP KRAKRILANR QSAARSKERK TRYTSELERK
201: VQTLQTEATT LSAQITVLQR DTSGLNAENK ELKFRLQALE QQAHLRDALN DTLREELQRL KIEAGQLPSA NGNRGMH
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
Arabidopsis Description
VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.