Factsheet for Bra034916.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra032191.1-P
Bra034916.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	Bra032191.1-P	AT1G43700.1	15824315
AT1G43700.1	Bra034916.1-P	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48943	Canola	nucleus	88.97	97.1
CDX80722	Canola	nucleus	94.68	77.33
Bra032191.1-P	Field mustard	nucleus	87.07	69.39
AT1G43700.1	Thale cress	nucleus	77.95	60.12
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	53.23	53.64
GSMUA_Achr3P19170_001	Banana	nucleus	36.88	48.5
Solyc06g060490.2.1	Tomato	nucleus	48.67	46.21
TraesCS5B01G124200.1	Wheat	nucleus	46.01	43.21
PGSC0003DMT400045314	Potato	nucleus	52.09	42.02
Solyc04g071160.2.1	Tomato	nucleus	54.37	41.94
VIT_18s0076g00330.t01	Wine grape	nucleus	55.51	41.71
PGSC0003DMT400002100	Potato	nucleus	53.61	41.47
HORVU4Hr1G020540.1	Barley	nucleus	49.05	39.94
TraesCS4B01G113400.1	Wheat	nucleus	49.43	39.51
KRH70316	Soybean	nucleus	49.43	39.39
TraesCS4D01G110900.1	Wheat	nucleus	49.05	39.09
TraesCS4A01G209900.1	Wheat	nucleus	49.05	38.97
Zm00001d041920_P001	Maize	nucleus	47.15	38.63
TraesCS5A01G124600.1	Wheat	nucleus	48.29	38.25
TraesCS5D01G132300.1	Wheat	nucleus	48.29	38.25
EES08023	Sorghum	nucleus	49.43	38.24
Zm00001d053162_P003	Maize	nucleus	49.05	38.17
GSMUA_Achr10P...	Banana	nucleus	45.25	38.02
Os12t0162500-01	Rice	plasma membrane	47.15	37.8
Os11t0160500-01	Rice	nucleus, plasma membrane	33.84	37.71
GSMUA_Achr6P18130_001	Banana	nucleus	41.44	37.2
Zm00001d004857_P001	Maize	nucleus	48.67	36.57
GSMUA_Achr6P13040_001	Banana	nucleus	38.78	35.92
EES15709	Sorghum	nucleus	47.53	35.82
GSMUA_Achr10P...	Banana	nucleus	45.25	35.42
HORVU5Hr1G039870.5	Barley	nucleus, plastid	47.15	34.73
Zm00001d023507_P001	Maize	nucleus, plastid	47.15	31.16
Bra030663.1-P	Field mustard	nucleus	35.36	29.06
KRH08713	Soybean	nucleus	46.77	28.87
Bra031541.1-P	Field mustard	nucleus	34.98	28.4
Bra021735.1-P	Field mustard	nucleus	36.5	28.32
Bra035464.1-P	Field mustard	nucleus	18.63	27.84
Bra016980.1-P	Field mustard	nucleus	35.74	27.49
Bra018250.1-P	Field mustard	nucleus	38.4	27.01
Bra030637.1-P	Field mustard	nucleus	38.4	26.51
Bra004582.1-P	Field mustard	nucleus	35.74	26.4
Bra015471.1-P	Field mustard	nucleus	37.26	25.0
Bra033582.1-P	Field mustard	nucleus	36.5	21.52
Bra010722.1-P	Field mustard	nucleus	36.12	21.35
Bra000195.1-P	Field mustard	nucleus	27.0	21.26
Bra030314.1-P	Field mustard	plastid	34.22	19.57
Bra031172.1-P	Field mustard	nucleus	27.76	19.41
Bra004689.1-P	Field mustard	nucleus, plastid	21.29	18.3
Bra003320.1-P	Field mustard	nucleus	20.53	17.76
Bra007380.1-P	Field mustard	nucleus	20.91	17.3
Bra034913.1-P	Field mustard	nucleus	13.31	15.77
Bra000256.1-P	Field mustard	nucleus, plastid	21.29	15.47
Bra031173.1-P	Field mustard	plastid	20.15	13.7
Bra027885.1-P	Field mustard	nucleus	18.63	13.14
Bra009426.1-P	Field mustard	mitochondrion, nucleus	12.17	10.42

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra034916	EnsemblPlants:Bra034916.1	EnsemblPlants:Bra034916.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:M4F1H0	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0002547268	InterPro:bZIP	SEG:seg	:	:

Description

AT1G43700 (E=7e-073) VIP1 | VIP1 (VIRE2-INTERACTING PROTEIN 1); protein binding / transcription factor

Coordinates

chrA08:-:5303103..5304533

Molecular Weight (calculated)

29004.1 Da

IEP (calculated)

9.820

GRAVY (calculated)

-0.794

Length

263 amino acids

Sequence
(BLAST)

001: MWISRPSISS TLQPSLMSVD SPPEETSSNG APQIPLPPGR HVRSFSVDSD SDFFDDLTAT EDNQFARATS PGERKGHHRS NSMDGATSSG SFNMEAILAA
101: VNCKDGGKKN MGMASDRLAE LALLDPKRAK RILANRQSAA RSKERKVRYT GELERKVQTL QNEATTLSAQ VTLLQRGTSD LTTENKHLKM RLQALQQQAE
201: LRDALNEALR EELNRLKMAA GEIPQGKGNS YNCTQFLSQF GNNKNQQMST NGQPSFLDFT KRG

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.