Factsheet for Bra032191.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra032191.1-P
Bra034916.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	Bra032191.1-P	AT1G43700.1	15824315
AT1G43700.1	Bra034916.1-P	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30752	Canola	nucleus	99.09	99.09
CDY71925	Canola	nucleus	73.33	95.28
Bra034916.1-P	Field mustard	nucleus, plastid	69.39	87.07
AT1G43700.1	Thale cress	nucleus	80.3	77.71
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	43.94	55.56
Solyc06g060490.2.1	Tomato	nucleus	44.55	53.07
TraesCS5B01G124200.1	Wheat	nucleus	44.85	52.86
GSMUA_Achr3P19170_001	Banana	nucleus	30.61	50.5
VIT_18s0076g00330.t01	Wine grape	nucleus	52.73	49.71
KRH70316	Soybean	nucleus	49.39	49.39
Solyc04g071160.2.1	Tomato	nucleus	50.91	49.27
PGSC0003DMT400002100	Potato	nucleus	50.61	49.12
HORVU4Hr1G020540.1	Barley	nucleus	47.88	48.92
TraesCS4B01G113400.1	Wheat	nucleus	48.18	48.33
PGSC0003DMT400045314	Potato	nucleus	47.58	48.16
Os11t0160500-01	Rice	nucleus, plasma membrane	34.24	47.88
TraesCS4D01G110900.1	Wheat	nucleus	47.88	47.88
TraesCS4A01G209900.1	Wheat	nucleus	47.88	47.73
TraesCS5D01G132300.1	Wheat	nucleus	47.27	46.99
EES08023	Sorghum	nucleus	48.18	46.76
Zm00001d041920_P001	Maize	nucleus	45.45	46.73
TraesCS5A01G124600.1	Wheat	nucleus	46.97	46.69
Zm00001d053162_P003	Maize	nucleus	47.58	46.45
Os12t0162500-01	Rice	plasma membrane	45.76	46.04
GSMUA_Achr6P18130_001	Banana	nucleus	40.0	45.05
GSMUA_Achr10P...	Banana	nucleus	42.12	44.41
EES15709	Sorghum	nucleus	46.67	44.13
Zm00001d004857_P001	Maize	nucleus	46.67	44.0
HORVU5Hr1G039870.5	Barley	nucleus, plastid	46.36	42.86
GSMUA_Achr6P13040_001	Banana	nucleus	36.06	41.9
GSMUA_Achr10P...	Banana	nucleus	40.3	39.58
Zm00001d023507_P001	Maize	nucleus, plastid	46.36	38.44
KRH08713	Soybean	nucleus	46.67	36.15
Bra021735.1-P	Field mustard	nucleus	33.33	32.45
Bra031541.1-P	Field mustard	nucleus	31.82	32.41
Bra030663.1-P	Field mustard	nucleus	30.91	31.88
Bra018250.1-P	Field mustard	nucleus	34.24	30.21
Bra016980.1-P	Field mustard	nucleus	30.91	29.82
Bra030637.1-P	Field mustard	nucleus	33.64	29.13
Bra015471.1-P	Field mustard	nucleus	33.94	28.57
Bra004582.1-P	Field mustard	nucleus	30.61	28.37
Bra035464.1-P	Field mustard	nucleus	14.85	27.84
Bra033582.1-P	Field mustard	nucleus	31.52	23.32
Bra000195.1-P	Field mustard	nucleus	23.03	22.75
Bra010722.1-P	Field mustard	nucleus	30.3	22.47
Bra031172.1-P	Field mustard	nucleus	24.85	21.81
Bra030314.1-P	Field mustard	plastid	29.7	21.3
Bra004689.1-P	Field mustard	nucleus, plastid	19.09	20.59
Bra003320.1-P	Field mustard	nucleus	18.18	19.74
Bra007380.1-P	Field mustard	nucleus	18.48	19.18
Bra000256.1-P	Field mustard	nucleus, plastid	19.09	17.4
Bra034913.1-P	Field mustard	nucleus	11.52	17.12
Bra027885.1-P	Field mustard	nucleus	18.79	16.62
Bra031173.1-P	Field mustard	plastid	17.27	14.73
Bra009426.1-P	Field mustard	mitochondrion, nucleus	11.52	12.38

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra032191	EnsemblPlants:Bra032191.1	EnsemblPlants:Bra032191.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M4ETQ9	PFAM:PF00170	PFscan:PS50217
PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002547E89	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

AT1G43700 (E=3e-114) VIP1 | VIP1 (VIRE2-INTERACTING PROTEIN 1); protein binding / transcription factor

Coordinates

chrA05:+:13100543..13102020

Molecular Weight (calculated)

36371.4 Da

IEP (calculated)

8.517

GRAVY (calculated)

-0.858

Length

330 amino acids

Sequence
(BLAST)

001: MEPSSLRANQ SSILSEIERM PEAPRQRISH HRRARSDTFF SGESIDDLLL FDPSDVDFSS LDFLNAPTPQ TQPQPQPSPM SVDSPPEETS SNGAPPIPLP
101: PGRHVRSFSV DSESNFFDDL AATEDTQFAR PTSSGGRKGH HHRSNSMDGA TSSGSFNMDS ILAAVNCKDG AKKNMGMASD RLAELALLDP KRAKRILANR
201: QSAARSKERK IKYTGELERK VQTLQNEATT LSAQVTMLQR GTSDLTTENK HLKMRLQALE QQAELRDALN EALRGELNRL KIAAGEIPQG NGNSFNNNRS
301: QFSSQLGNNK NQQMSTNGQP SSFMDFNKRG

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.