Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43700.1 | CDX80722 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | CDY30752 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | CDY48943 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | CDY71925 | AT1G43700.1 | 15824315 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032191.1-P | Field mustard | nucleus | 99.09 | 99.09 |
| CDY71925 | Canola | nucleus | 72.42 | 94.09 |
| CDY48943 | Canola | nucleus | 65.45 | 89.63 |
| CDX80722 | Canola | nucleus | 86.67 | 88.82 |
| AT1G43700.1 | Thale cress | nucleus | 79.7 | 77.13 |
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 43.94 | 55.56 |
| Solyc06g060490.2.1 | Tomato | nucleus | 44.55 | 53.07 |
| TraesCS5B01G124200.1 | Wheat | nucleus | 44.55 | 52.5 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 30.61 | 50.5 |
| VIT_18s0076g00330.t01 | Wine grape | nucleus | 52.73 | 49.71 |
| KRH70316 | Soybean | nucleus | 49.39 | 49.39 |
| Solyc04g071160.2.1 | Tomato | nucleus | 50.91 | 49.27 |
| PGSC0003DMT400002100 | Potato | nucleus | 50.61 | 49.12 |
| HORVU4Hr1G020540.1 | Barley | nucleus | 47.58 | 48.61 |
| PGSC0003DMT400045314 | Potato | nucleus | 47.58 | 48.16 |
| TraesCS4B01G113400.1 | Wheat | nucleus | 47.88 | 48.02 |
| TraesCS4D01G110900.1 | Wheat | nucleus | 47.58 | 47.58 |
| Os11t0160500-01 | Rice | nucleus, plasma membrane | 33.94 | 47.46 |
| TraesCS4A01G209900.1 | Wheat | nucleus | 47.58 | 47.43 |
| EES08023 | Sorghum | nucleus | 48.18 | 46.76 |
| TraesCS5D01G132300.1 | Wheat | nucleus | 46.97 | 46.69 |
| Zm00001d053162_P003 | Maize | nucleus | 47.58 | 46.45 |
| Zm00001d041920_P001 | Maize | nucleus | 45.15 | 46.42 |
| TraesCS5A01G124600.1 | Wheat | nucleus | 46.67 | 46.39 |
| Os12t0162500-01 | Rice | plasma membrane | 45.76 | 46.04 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 40.0 | 45.05 |
| GSMUA_Achr10P... | Banana | nucleus | 42.12 | 44.41 |
| EES15709 | Sorghum | nucleus | 46.67 | 44.13 |
| Zm00001d004857_P001 | Maize | nucleus | 46.67 | 44.0 |
| HORVU5Hr1G039870.5 | Barley | nucleus, plastid | 46.06 | 42.58 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 35.76 | 41.55 |
| GSMUA_Achr10P... | Banana | nucleus | 40.0 | 39.29 |
| Zm00001d023507_P001 | Maize | nucleus, plastid | 46.06 | 38.19 |
| CDY35020 | Canola | nucleus | 19.7 | 36.93 |
| KRH08713 | Soybean | nucleus | 46.67 | 36.15 |
| CDY19094 | Canola | nucleus | 33.03 | 34.28 |
| CDY06231 | Canola | nucleus | 31.82 | 32.31 |
| CDY09952 | Canola | nucleus | 31.82 | 32.01 |
| CDY15590 | Canola | nucleus | 30.91 | 31.78 |
| CDX86512 | Canola | nucleus | 30.61 | 31.76 |
| CDY56611 | Canola | nucleus | 34.24 | 30.71 |
| CDY10799 | Canola | nucleus | 33.94 | 30.19 |
| CDX93167 | Canola | nucleus | 30.91 | 29.74 |
| CDY15381 | Canola | nucleus | 33.33 | 29.73 |
| CDY06974 | Canola | nucleus | 30.91 | 28.98 |
| CDY15560 | Canola | nucleus | 33.03 | 28.61 |
| CDX86537 | Canola | nucleus | 33.94 | 28.5 |
| CDY10170 | Canola | nucleus | 33.94 | 28.5 |
| CDY23889 | Canola | nucleus | 30.61 | 28.45 |
| CDX79976 | Canola | nucleus | 30.61 | 28.37 |
| CDY47713 | Canola | nucleus | 33.64 | 28.32 |
| CDY13830 | Canola | nucleus, plastid | 24.24 | 26.06 |
| CDY24896 | Canola | nucleus | 26.06 | 25.37 |
| CDX72732 | Canola | nucleus | 33.03 | 24.72 |
| CDY12108 | Canola | nucleus | 31.52 | 24.41 |
| CDY22407 | Canola | nucleus | 31.82 | 23.6 |
| CDX90298 | Canola | nucleus | 30.3 | 22.83 |
| CDX71974 | Canola | nucleus, plastid | 18.18 | 22.47 |
| CDY07597 | Canola | nucleus | 22.73 | 22.46 |
| CDY64520 | Canola | nucleus, plastid | 18.48 | 22.34 |
| CDY15909 | Canola | plastid | 29.7 | 22.07 |
| CDX82008 | Canola | nucleus | 24.85 | 22.04 |
| CDX71000 | Canola | nucleus, plastid | 18.48 | 21.86 |
| CDX79872 | Canola | nucleus, plastid | 18.48 | 21.79 |
| CDX99610 | Canola | nucleus | 29.09 | 21.72 |
| CDY22561 | Canola | nucleus, plastid | 17.58 | 21.64 |
| CDY35379 | Canola | nucleus, plastid | 17.27 | 21.27 |
| CDY06053 | Canola | nucleus | 18.18 | 21.13 |
| CDY56238 | Canola | extracellular | 8.48 | 20.9 |
| CDX98266 | Canola | nucleus, plastid | 18.18 | 20.13 |
| CDY46864 | Canola | nucleus | 19.09 | 18.86 |
| CDY23807 | Canola | nucleus | 19.09 | 18.75 |
| CDY39913 | Canola | nucleus | 18.79 | 16.71 |
| CDY29162 | Canola | nucleus | 18.79 | 16.58 |
| CDY48939 | Canola | nucleus | 14.55 | 15.53 |
| CDX80717 | Canola | nucleus, plastid | 14.55 | 15.0 |
| CDX82009 | Canola | plastid | 17.27 | 14.88 |
| CDY70502 | Canola | nucleus | 17.27 | 14.77 |
| CDY13828 | Canola | plastid | 17.27 | 14.73 |
| CDY44883 | Canola | mitochondrion, nucleus | 11.21 | 12.09 |
| CDX70198 | Canola | mitochondrion, nucleus | 11.21 | 12.05 |
| CDY13829 | Canola | cytosol | 0.3 | 9.09 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078GZU3 | UniProt:A0A078GZU3 | EnsemblPlants:CDY30752 | ProteinID:CDY30752 |
| ProteinID:CDY30752.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00046119001 | InterPro:IPR004827 |
| PFAM:PF00170 | PFscan:PS50217 | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF86 | SMART:SM00338 | SUPFAM:SSF57959 |
| UniParc:UPI0004EE18A4 | InterPro:bZIP | SEG:seg | : | : | : |
Description
BnaC05g51490DBnaC05g51490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZU3]
Coordinates
chrLK032259:+:77683..79485
Molecular Weight (calculated)
36511.6 Da
IEP (calculated)
9.137
GRAVY (calculated)
-0.885
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSSLRANQ SSILSEIERM PEAPRQRISH HRRARSDTFF SGESIDDLLL FDPSDVDFSS LDFLNAPTPQ TQPQPQPQPM SVDSPPEETS SNGAPPIPLP
101: PGRHVRSFSV DSESNFFDDL TATEDTQFAR PTRSGGRKGH HHRSNSMDGA TSSGSFNMDS ILAAVNCKDG AKKNMGMASD RLAELALLDP KRAKRILANR
201: QSAARSKERK IKYTGELERK VQTLQNEATT LSAQVTMLQR GTSDLTTENK HLKMRLQALE QQAELRDALN EALRGELNRL KIAAGEIPQG NGNSFNNNRS
301: QFSSQLGNNK NQQMSTNGQP SSFMDFNKRG
101: PGRHVRSFSV DSESNFFDDL TATEDTQFAR PTRSGGRKGH HHRSNSMDGA TSSGSFNMDS ILAAVNCKDG AKKNMGMASD RLAELALLDP KRAKRILANR
201: QSAARSKERK IKYTGELERK VQTLQNEATT LSAQVTMLQR GTSDLTTENK HLKMRLQALE QQAELRDALN EALRGELNRL KIAAGEIPQG NGNSFNNNRS
301: QFSSQLGNNK NQQMSTNGQP SSFMDFNKRG
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
Arabidopsis Description
VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.