Factsheet for GSMUA_Achr6P13040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P19170_001
GSMUA_Achr6P13040_001
GSMUA_Achr6P18130_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	GSMUA_Achr10P...	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr10P...	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr3P19170_001	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr6P13040_001	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr6P18130_001	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P19170_001	Banana	nucleus	44.37	63.0
GSMUA_Achr6P18130_001	Banana	nucleus	64.08	62.12
GSMUA_Achr10P...	Banana	nucleus	72.54	61.31
GSMUA_Achr10P...	Banana	nucleus	65.14	59.11
Os12t0162500-01	Rice	plasma membrane	59.51	51.52
TraesCS5B01G124200.1	Wheat	nucleus	50.35	51.07
Zm00001d053162_P003	Maize	nucleus	59.86	50.3
Zm00001d041920_P001	Maize	nucleus	56.34	49.84
HORVU4Hr1G020540.1	Barley	nucleus	55.99	49.23
EES08023	Sorghum	nucleus	58.8	49.12
Zm00001d004857_P001	Maize	nucleus	59.51	48.29
EES15709	Sorghum	nucleus	59.15	48.14
TraesCS4D01G110900.1	Wheat	nucleus	55.28	47.58
TraesCS4A01G209900.1	Wheat	nucleus	55.28	47.43
TraesCS4B01G113400.1	Wheat	nucleus	54.93	47.42
TraesCS5D01G132300.1	Wheat	nucleus	55.28	47.29
TraesCS5A01G124600.1	Wheat	nucleus	55.28	47.29
Os11t0160500-01	Rice	nucleus, plasma membrane	39.08	47.03
HORVU5Hr1G039870.5	Barley	nucleus, plastid	54.93	43.7
Solyc06g060490.2.1	Tomato	nucleus	41.9	42.96
Zm00001d023507_P001	Maize	nucleus, plastid	57.75	41.21
CDY48943	Canola	nucleus	34.86	41.08
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	37.32	40.61
VIT_18s0076g00330.t01	Wine grape	nucleus	48.24	39.14
Bra034916.1-P	Field mustard	nucleus, plastid	35.92	38.78
KRH70316	Soybean	nucleus	44.72	38.48
PGSC0003DMT400045314	Potato	nucleus	44.01	38.34
Solyc04g071160.2.1	Tomato	nucleus	45.42	37.83
PGSC0003DMT400002100	Potato	nucleus	44.72	37.35
Bra032191.1-P	Field mustard	nucleus	41.9	36.06
CDY30752	Canola	nucleus	41.55	35.76
CDX80722	Canola	nucleus	40.49	35.71
GSMUA_Achr6P32530_001	Banana	nucleus	39.08	34.8
GSMUA_Achr2P18830_001	Banana	nucleus	35.21	34.72
CDY71925	Canola	nucleus	30.63	34.25
AT1G43700.1	Thale cress	nucleus	40.85	34.02
GSMUA_Achr11P...	Banana	nucleus	36.97	33.65
GSMUA_AchrUn_...	Banana	nucleus	40.49	33.24
GSMUA_Achr5P25700_001	Banana	nucleus	39.44	31.55
GSMUA_Achr11P...	Banana	nucleus	40.85	31.02
GSMUA_Achr5P20200_001	Banana	nucleus	29.23	29.86
GSMUA_AchrUn_...	Banana	nucleus	40.85	29.07
GSMUA_Achr11P...	Banana	nucleus	43.31	27.46
KRH08713	Soybean	nucleus	40.85	27.23
GSMUA_Achr5P29650_001	Banana	nucleus	35.56	26.51
GSMUA_Achr3P31390_001	Banana	nucleus	20.42	26.01
GSMUA_Achr3P03550_001	Banana	nucleus	20.77	25.43
GSMUA_Achr9P06540_001	Banana	nucleus	21.13	24.59
GSMUA_Achr6P26930_001	Banana	nucleus	21.13	23.72
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	34.51	23.11
GSMUA_Achr7P25310_001	Banana	nucleus	21.13	21.74
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	34.86	21.24
GSMUA_Achr4P10560_001	Banana	nucleus	20.07	21.03
GSMUA_Achr3P12290_001	Banana	nucleus	36.97	21.0
GSMUA_Achr8P12090_001	Banana	nucleus	33.8	20.3
GSMUA_Achr9P00300_001	Banana	nucleus	21.83	16.49
GSMUA_Achr8P29390_001	Banana	nucleus	20.42	15.85
GSMUA_Achr3P02820_001	Banana	golgi	19.72	13.97
GSMUA_Achr3P19190_001	Banana	nucleus	15.49	12.9
GSMUA_Achr10P...	Banana	nucleus	13.03	11.31
GSMUA_Achr5P17400_001	Banana	nucleus	14.79	10.85

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G13040_001	EnsemblPlants:GSMUA_Achr6P13040_001	EnsemblPlants:GSMUA_Achr6T13040_001	InterPro:IPR004827
UniProt:M0T6K2	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI000295A12B	InterPro:bZIP	SEG:seg	:	:

Description

bZIP transcription factor domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G13040_001]

Coordinates

chr6:-:8748257..8752413

Molecular Weight (calculated)

31164.5 Da

IEP (calculated)

6.731

GRAVY (calculated)

-0.699

Length

284 amino acids

Sequence
(BLAST)

001: MNPRFGQIPF PTPRGGGGGG ASHHRRALSE TFVRLPDDLL FDSDPDFEIP DIDFSSLSDD NFSGDNGAPI AAEPARAATS AAVAAAGTGR PVPGAHLRSL
101: SGESAPPLSD FAKKTMPSEK LAELALIDPK RAKRILANRQ SAARSKERKI HYTSELERKV ETLQTEATSL SAQLTLLQKD GTGLTAENRE LKLRLQAMEQ
201: QAKLREALSE TLREEVERLK KATRQLSSVN QYPDNILIQQ SVQNYYTHHQ QLPHPSNQAQ HLRSSPAQDS SDDKSCLSDP MDFM

Best Arabidopsis Sequence Match ( AT2G31370.1 )
(BLAST)

001: MDKEKSPAPP CGGLPPPSPS GRCSAFSEAG PIGHGSDANR MSHDISRMLD NPPKKIGHRR AHSEILTLPD DLSFDSDLGV VGNAADGASF SDETEEDLLS
101: MYLDMDKFNS SATSSAQVGE PSGTAWKNET MMQTGTGSTS NPQNTVNSLG ERPRIRHQHS QSMDGSMNIN EMLMSGNEDD SAIDAKKSMS ATKLAELALI
201: DPKRAKRIWA NRQSAARSKE RKTRYIFELE RKVQTLQTEA TTLSAQLTLL QRDTNGLTVE NNELKLRLQT MEQQVHLQDE LNEALKEEIQ HLKVLTGQVA
301: PSALNYGSFG SNQQQFYSNN QSMQTILAAK QFQQLQIHSQ KQQQQQQQQQ QQHQQQQQQQ QQYQFQQQQM QQLMQQRLQQ QEQQNGVRLK PSQAQKEN

Arabidopsis Description

POSF21AT2G31370 protein [Source:UniProtKB/TrEMBL;Acc:B9DGB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.