Factsheet for GSMUA_AchrUn_randomP14020_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P18830_001	Banana	nucleus	59.25	71.18
GSMUA_Achr6P32530_001	Banana	nucleus	50.0	54.23
GSMUA_Achr3P19170_001	Banana	nucleus	27.46	47.5
GSMUA_Achr11P...	Banana	nucleus	41.62	46.15
GSMUA_Achr6P13040_001	Banana	nucleus	33.24	40.49
GSMUA_Achr6P18130_001	Banana	nucleus	34.1	40.27
GSMUA_Achr5P29650_001	Banana	nucleus	42.49	38.58
GSMUA_Achr10P...	Banana	nucleus	33.81	37.38
GSMUA_Achr5P20200_001	Banana	nucleus	27.75	34.53
GSMUA_Achr11P...	Banana	nucleus	36.42	33.69
GSMUA_Achr5P25700_001	Banana	nucleus	32.95	32.11
GSMUA_Achr10P...	Banana	nucleus	30.92	31.85
GSMUA_AchrUn_...	Banana	nucleus	36.13	31.33
GSMUA_Achr9P06540_001	Banana	nucleus	20.81	29.51
GSMUA_Achr11P...	Banana	nucleus	36.42	28.12
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	34.39	28.07
GSMUA_Achr6P26930_001	Banana	nucleus	20.52	28.06
GSMUA_Achr3P03550_001	Banana	nucleus	18.5	27.59
GSMUA_Achr3P31390_001	Banana	nucleus	17.34	26.91
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	36.13	26.82
GSMUA_Achr3P12290_001	Banana	nucleus	38.73	26.8
GSMUA_Achr4P10560_001	Banana	nucleus	19.36	24.72
GSMUA_Achr7P25310_001	Banana	nucleus	19.65	24.64
GSMUA_Achr8P12090_001	Banana	nucleus	32.37	23.68
GSMUA_Achr9P00300_001	Banana	nucleus	17.92	16.49
GSMUA_Achr8P29390_001	Banana	nucleus	15.61	14.75
GSMUA_Achr10P...	Banana	nucleus	12.43	13.15
GSMUA_Achr3P02820_001	Banana	golgi	14.45	12.47
GSMUA_Achr3P19190_001	Banana	nucleus	11.56	11.73
GSMUA_Achr5P17400_001	Banana	nucleus	12.43	11.11

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG14020_001	EnsemblPlants:GSMUA_AchrUn_randomP14020_001	EnsemblPlants:GSMUA_AchrUn_randomT14020_001	InterPro:IPR004827
UniProt:M0U911	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF84	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0002968810	InterPro:bZIP	SEG:seg	:	:

Description

Transcription factor RF2b [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG14020_001]

Coordinates

chrchrUn_random:+:65844056..65848464

Molecular Weight (calculated)

38008.1 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.570

Length

346 amino acids

Sequence
(BLAST)

001: MQTRGPDPPP SPNPIPDHRN LPSNESPVAP GPLPAEAAGA PPSMFPVPHH RRARSELAFR LPDDLDLRGA VPVDEIGSED DLFCTFMDID KIGSGCAEEA
101: KPRHRHSVSV DGSSMTSSAT MRREGLSGEV METKKAMTPE QLAELAVIDP KRAKRILANR QSAARSKERK AYYISELERK VKTLQTEATT LSAQLTLLQR
201: DTAGLSAENT ELKLQLQAME LQAQLRDALS EALKQEVQRL KIATGEVSKP DESCNIGQHS ALYSSSFFTL PQQQPIHLQA IQFQPQFQHL QPGLLNQHMI
301: SHPNDLPQVM QQHPLGRLQG LDINNGAHMV KSESSTVSVS ESSSTF

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.