Factsheet for GSMUA_Achr3P12290_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20200_001	Banana	nucleus	35.0	62.95
VIT_18s0001g13740.t01	Wine grape	nucleus	16.4	62.12
TraesCS7D01G269300.1	Wheat	nucleus	50.8	53.7
TraesCS7A01G268700.1	Wheat	nucleus	49.6	53.1
Zm00001d052725_P001	Maize	nucleus	49.4	53.0
Zm00001d031723_P002	Maize	nucleus	48.8	52.47
Os08t0543900-00	Rice	nucleus	48.2	51.94
EES15257	Sorghum	nucleus	50.6	51.42
GSMUA_Achr8P12090_001	Banana	nucleus	47.8	50.53
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	42.2	49.76
HORVU7Hr1G056490.1	Barley	nucleus, plastid	49.4	47.87
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	43.2	46.35
GSMUA_Achr3P19170_001	Banana	nucleus	18.4	46.0
PGSC0003DMT400009538	Potato	nucleus	39.0	43.92
Solyc04g081190.2.1	Tomato	nucleus	38.4	43.24
KRH61066	Soybean	nucleus, plastid	42.2	41.13
GSMUA_Achr2P18830_001	Banana	nucleus	23.6	40.97
GSMUA_AchrUn_...	Banana	nucleus	26.8	38.73
GSMUA_Achr11P...	Banana	nucleus	24.0	38.46
KRH17396	Soybean	nucleus	42.2	37.75
KRH05913	Soybean	nucleus	41.6	37.61
GSMUA_Achr6P18130_001	Banana	nucleus	22.0	37.54
GSMUA_Achr11P...	Banana	nucleus	28.0	37.43
GSMUA_Achr10P...	Banana	nucleus	23.2	37.06
GSMUA_Achr6P13040_001	Banana	nucleus	21.0	36.97
GSMUA_Achr5P25700_001	Banana	nucleus	25.8	36.34
KRH51734	Soybean	nucleus	29.0	36.16
GSMUA_Achr6P32530_001	Banana	nucleus	22.8	35.74
GSMUA_AchrUn_...	Banana	nucleus	27.2	34.09
GSMUA_Achr6P26930_001	Banana	nucleus	16.4	32.41
GSMUA_Achr11P...	Banana	nucleus	28.8	32.14
GSMUA_Achr9P06540_001	Banana	nucleus	15.6	31.97
GSMUA_Achr3P31390_001	Banana	nucleus	14.0	31.39
GSMUA_Achr10P...	Banana	nucleus	20.8	30.95
GSMUA_Achr4P10560_001	Banana	nucleus	15.6	28.78
GSMUA_Achr3P03550_001	Banana	nucleus	13.2	28.45
GSMUA_Achr5P29650_001	Banana	nucleus	21.6	28.35
GSMUA_Achr7P25310_001	Banana	nucleus	15.6	28.26
GSMUA_Achr8P29390_001	Banana	nucleus	15.6	21.31
GSMUA_Achr9P00300_001	Banana	nucleus	14.2	18.88
GSMUA_Achr3P02820_001	Banana	golgi	14.0	17.46
GSMUA_Achr10P...	Banana	nucleus	10.6	16.21
GSMUA_Achr3P19190_001	Banana	nucleus	10.2	14.96
GSMUA_Achr5P17400_001	Banana	nucleus	10.4	13.44

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G12290_001	EnsemblPlants:GSMUA_Achr3P12290_001	EnsemblPlants:GSMUA_Achr3T12290_001	InterPro:IPR004827
UniProt:M0SDZ6	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF76	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI000296334D	InterPro:bZIP	SEG:seg	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G12290_001]

Coordinates

chr3:+:9091843..9096599

Molecular Weight (calculated)

53931.9 Da

IEP (calculated)

7.350

GRAVY (calculated)

-0.662

Length

500 amino acids

Sequence
(BLAST)

001: MGEAEAATRN DLMQRLKPSA ASTSSCSAAA PPKAPNSASF FRHFAPNSFG PEASRRPGIP PIPPPPSPSS AAAAVRPPSP ISSASAAFHS RSLSQPPAFF
101: SLDSLPPPLS PPAFAGATSD ASLADRARPV SAGLPPRKAH RRSQSDVPIG FLQSFSSSSS SSSPSSAEGT GDRKEDAGDA ADDLFNAYMN LDSLDALNSS
201: GMEERHEDFD SSRLSGARMS ATETSENEAE SSVNESSGGG VKKEGNKRSA AGDLTPISMR HCRSLSMDSF MGKLNFGDEL PKLLPSPGIQ MPHLLRSGSM
301: DRTANTLSLE FGNGEFSSAE IKKIMANEKL AEMAITDPKR VKRILANRQS AARSKERKMR YISELEHKVQ TLQTEATTLS AQLTLLQRDS AGLTCQNNEL
401: RIRLQAMEQQ AQLRDAINEA LTAEVQRLKL ATGEITEAQL SKTINQQLAT SSQMFHLHQL QSQQQNQQST HVPLYQFQQP QQQQQQQQQN NTASEVESKN

Best Arabidopsis Sequence Match ( AT4G38900.3 )
(BLAST)

001: MGDTEKCNSD MIQRLHSSFG TTSSSIPKNP ISQLDLNPNF IRSSAPQFSK PFSDSGKRIG VPPSHPNLIP PTSPFSQIPT TRQPGSHNFN PGGANHSRSM
101: SQPNSFFSFD SLPPLSPSPF RDHDVSMEDR DSGVFNSNHS LPPSPFTRCN STSSSSLRVG ESLPPRKSHR RSNSDIPSGF NSMPLIPPRP LERSFSGGEC
201: ADWSKSNPFV KKESSCEREG VGEREAMDDL FSAYMNLENI DVLNSSEADD SKNGNENRDD MESSRASGTK TNGSDTEGES SSVNESANNN MNSSGEKRES
301: VKRRAAGGDI APTTRHYRSV SVDSCFMEKL SFGDESLKPP PSPGSMSRKV SPTNSVDGNS GAAFSIEFNN GEFTAAEMKK IMANDKLAEM AMSDPKRVKR
401: ILANRQSAAR SKERKMRYIV ELEHKVQTLQ TEATTLSAQL TLLQRDMMGL TNQNNELKFR LQAMEQQARL RDALNEALNG EVQRLKLAIG ESSQNESERS
501: KMQSLNAEMF QQLNISQLRQ QPQQMQQQSH QQNHQNGTMA TKSESNE

Arabidopsis Description

Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q9T0J7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.