Factsheet for GSMUA_Achr6P32530_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P18830_001	Banana	nucleus	49.53	54.86
Os03t0336200-02	Rice	nucleus	56.11	54.41
HORVU4Hr1G050190.1	Barley	nucleus	56.43	50.7
TraesCS4D01G171700.2	Wheat	nucleus	56.11	50.28
TraesCS4A01G135600.2	Wheat	nucleus	56.11	50.28
OQU92641	Sorghum	nucleus	54.86	50.14
GSMUA_AchrUn_...	Banana	nucleus	54.23	50.0
TraesCS4B01G169600.1	Wheat	nucleus	55.8	50.0
Zm00001d047519_P001	Maize	nucleus	54.86	49.58
Zm00001d029064_P001	Maize	nucleus	53.6	49.42
GSMUA_Achr3P19170_001	Banana	nucleus	29.78	47.5
OQU90478	Sorghum	nucleus	55.8	47.09
TraesCS2D01G105400.1	Wheat	nucleus	53.6	46.47
TraesCS2A01G105700.1	Wheat	nucleus, plastid	53.6	46.47
Zm00001d007172_P001	Maize	plastid	52.66	46.41
TraesCS2B01G122700.1	Wheat	nucleus	53.29	45.95
Zm00001d022442_P001	Maize	nucleus	53.6	45.72
GSMUA_Achr11P...	Banana	nucleus	43.57	44.55
GSMUA_Achr6P18130_001	Banana	nucleus	37.93	41.3
Bra000195.1-P	Field mustard	nucleus	42.63	40.72
GSMUA_Achr6P13040_001	Banana	nucleus	34.8	39.08
HORVU2Hr1G017820.1	Barley	nucleus	44.83	39.07
GSMUA_Achr10P...	Banana	nucleus	37.93	38.66
GSMUA_Achr5P29650_001	Banana	nucleus	44.2	37.01
GSMUA_Achr10P...	Banana	nucleus	34.8	33.04
GSMUA_Achr11P...	Banana	nucleus	38.56	32.89
GSMUA_Achr5P25700_001	Banana	nucleus	36.05	32.39
GSMUA_AchrUn_...	Banana	nucleus	38.87	31.08
GSMUA_Achr5P20200_001	Banana	nucleus	26.33	30.22
GSMUA_Achr11P...	Banana	nucleus	39.81	28.35
GSMUA_Achr9P06540_001	Banana	nucleus	21.32	27.87
GSMUA_Achr3P03550_001	Banana	nucleus	19.75	27.16
KRH35159	Soybean	nucleus	26.33	26.5
CDY13830	Canola	nucleus, plastid	25.39	26.38
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	34.48	25.94
GSMUA_Achr6P26930_001	Banana	nucleus	20.38	25.69
GSMUA_Achr3P31390_001	Banana	nucleus	16.61	23.77
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	34.17	23.39
GSMUA_Achr7P25310_001	Banana	nucleus	19.75	22.83
GSMUA_Achr3P12290_001	Banana	nucleus	35.74	22.8
GSMUA_Achr8P12090_001	Banana	nucleus	31.97	21.56
GSMUA_Achr4P10560_001	Banana	nucleus	18.18	21.4
GSMUA_Achr9P00300_001	Banana	nucleus	18.5	15.69
GSMUA_Achr8P29390_001	Banana	nucleus	17.87	15.57
GSMUA_Achr3P19190_001	Banana	nucleus	14.42	13.49
GSMUA_Achr3P02820_001	Banana	golgi	16.3	12.97
GSMUA_Achr10P...	Banana	nucleus	12.85	12.54
GSMUA_Achr5P17400_001	Banana	nucleus	14.11	11.63
CDY13829	Canola	cytosol	0.31	9.09

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G32530_001	EnsemblPlants:GSMUA_Achr6P32530_001	EnsemblPlants:GSMUA_Achr6T32530_001	InterPro:IPR004827
UniProt:M0TC47	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF103	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0002961F65	InterPro:bZIP	SEG:seg	:	:

Description

Transcription factor RF2b [Source:GMGC_GENE;Acc:GSMUA_Achr6G32530_001]

Coordinates

chr6:+:31904903..31908437

Molecular Weight (calculated)

34909.2 Da

IEP (calculated)

6.440

GRAVY (calculated)

-0.521

Length

319 amino acids

Sequence
(BLAST)

001: MFHRLNPTPC APPQGIRHRR ARSELAFRVP EDLDHSSGDF FAVGGADKVG SEDDLFCTFM DVEQISDAAG AAPSRPKHRH SASVDVSSML SSVPLMGEEV
101: FAEAIEAKKA MTSEQLAELA AVDPKKAKRI LANRRSATRS KERKARYISE LERQVQNLQT EATTLFAQFT VFQRDTTGLS AENTELRLRL QAMEQQAQLH
201: DALNMALKQE VERLMLATGE VSNPPSGAYN GGLQHIPYDP SFASSQQQPV HHQAIQLQPK FQQSQPGASC NHLPAHQNSL PAMMEQDPIG GLQGLDISKS
301: SIVKLEEGSS VSADGTRNV

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.