Factsheet for GSMUA_AchrUn_randomP00680_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	82.46	73.44
GSMUA_Achr5P25700_001	Banana	nucleus	59.9	67.32
CDY19094	Canola	nucleus	46.87	58.8
Zm00001d021189_P001	Maize	nucleus	54.14	58.38
Zm00001d006127_P003	Maize	nucleus	53.88	57.95
EER99183	Sorghum	nucleus	55.39	56.38
GSMUA_Achr11P...	Banana	nucleus	52.63	56.15
Os09t0516200-01	Rice	nucleus	53.38	56.05
CDY15381	Canola	nucleus	51.63	55.68
CDY10170	Canola	nucleus	54.64	55.47
Bra015471.1-P	Field mustard	nucleus	54.14	55.1
CDY47713	Canola	nucleus	54.14	55.1
TraesCS5A01G299400.1	Wheat	nucleus	51.88	54.91
TraesCS5B01G301900.1	Wheat	nucleus	51.88	54.91
Bra030637.1-P	Field mustard	nucleus	52.38	54.86
TraesCS5D01G308600.1	Wheat	nucleus	51.63	54.79
AT2G31370.6	Thale cress	nucleus	54.64	54.77
CDY10799	Canola	nucleus	50.88	54.72
CDY15560	Canola	nucleus	52.13	54.59
VIT_05s0102g01120.t01	Wine grape	nucleus	58.15	54.59
Bra018250.1-P	Field mustard	nucleus	51.13	54.55
Bra021735.1-P	Field mustard	nucleus	46.12	54.28
CDY56611	Canola	nucleus	49.87	54.08
KRH10117	Soybean	nucleus	56.89	54.05
CDX86537	Canola	nucleus	53.13	53.94
KRH23219	Soybean	nucleus	56.64	52.8
Solyc06g053350.2.1	Tomato	plastid	57.14	52.53
AT1G06070.1	Thale cress	nucleus	55.64	52.48
GSMUA_Achr3P19170_001	Banana	nucleus	26.07	52.0
KRH29611	Soybean	nucleus	47.87	49.61
HORVU7Hr1G056230.2	Barley	nucleus	44.36	48.49
TraesCS7B01G166100.1	Wheat	nucleus	44.86	48.38
TraesCS7A01G266400.1	Wheat	nucleus	44.11	48.22
Zm00001d003180_P001	Maize	nucleus	44.36	47.97
TraesCS7D01G268400.1	Wheat	nucleus	44.11	47.83
Zm00001d031697_P001	Maize	nucleus	29.82	47.79
EES14151	Sorghum	nucleus	45.61	47.64
TraesCS2A01G352100.1	Wheat	nucleus	44.36	47.45
KRH24606	Soybean	nucleus	47.12	47.36
EES12438	Sorghum	nucleus	44.86	47.35
HORVU5Hr1G079160.11	Barley	vacuole	52.13	46.74
GSMUA_Achr6P18130_001	Banana	nucleus	33.33	45.39
HORVU2Hr1G085560.4	Barley	nucleus, plastid	43.61	45.08
Zm00001d052717_P001	Maize	nucleus	42.86	44.65
GSMUA_Achr10P...	Banana	nucleus	32.33	41.21
GSMUA_Achr6P13040_001	Banana	nucleus	29.07	40.85
GSMUA_Achr2P18830_001	Banana	nucleus	29.07	40.28
GSMUA_Achr6P32530_001	Banana	nucleus	31.08	38.87
GSMUA_Achr11P...	Banana	nucleus	30.08	38.46
GSMUA_AchrUn_...	Banana	nucleus	31.33	36.13
GSMUA_Achr5P20200_001	Banana	nucleus	24.56	35.25
GSMUA_Achr10P...	Banana	nucleus	29.32	34.82
GSMUA_Achr5P29650_001	Banana	nucleus	28.32	29.66
GSMUA_Achr6P26930_001	Banana	nucleus	18.8	29.64
GSMUA_Achr9P06540_001	Banana	nucleus	17.79	29.1
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	30.83	29.01
GSMUA_Achr3P03550_001	Banana	nucleus	16.79	28.88
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	32.58	27.9
GSMUA_Achr3P31390_001	Banana	nucleus	15.29	27.35
GSMUA_Achr3P12290_001	Banana	nucleus	34.09	27.2
GSMUA_Achr8P12090_001	Banana	nucleus	32.08	27.06
GSMUA_Achr7P25310_001	Banana	nucleus	17.54	25.36
GSMUA_Achr4P10560_001	Banana	nucleus	16.54	24.35
GSMUA_Achr8P29390_001	Banana	nucleus	17.79	19.4
GSMUA_Achr9P00300_001	Banana	nucleus	16.79	17.82
GSMUA_Achr3P02820_001	Banana	golgi	16.54	16.46
GSMUA_Achr3P19190_001	Banana	nucleus	12.28	14.37
GSMUA_Achr10P...	Banana	nucleus	11.28	13.76
GSMUA_Achr5P17400_001	Banana	nucleus	12.28	12.66

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG00680_001	EnsemblPlants:GSMUA_AchrUn_randomP00680_001	EnsemblPlants:GSMUA_AchrUn_randomT00680_001	InterPro:IPR004827
UniProt:M0U580	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF79	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0002957BF9	InterPro:bZIP	SEG:seg	:	:

Description

Probable transcription factor PosF21 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG00680_001]

Coordinates

chrchrUn_random:+:2953716..2965640

Molecular Weight (calculated)

43305.5 Da

IEP (calculated)

6.915

GRAVY (calculated)

-0.741

Length

399 amino acids

Sequence
(BLAST)

001: MDKDKSPAPG GGGGGGSGRG LPPHLPRYSP FGSPSSSFSF MGDLSASSSS QPSSNSGHFA YETPSDARRF SYDVSRMPDF PQRNAGHRRA HSEILGLPDD
101: ICFDSDLGVV GSHGGPSLSD EAEEDLVSMY IDVEKFSSGA TSAALSIGEP RIRHQHSQSL DGSTAIKSEF LLSGGEGPLS AEAKKAMSAA KLAELALVDP
201: KRTKRILANR QSAARSKERK MRYIAELERK VQTLQTEATT LSAQLTMLQR DTNGLTAENN ELKLRLQTME QQVHLQDALN EALREEVQHL KLATGQMLPN
301: GGQSTNTIPP SLGANHQFYH QNQAMHSLLA AHQFQQLQIH SQHPQQLQPS HQIQPPSSLQ HLHTLQPQQQ PPADLRMKGS STSQNQRGEA TSDNNSAQE

Best Arabidopsis Sequence Match ( AT1G06070.1 )
(BLAST)

001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD

Arabidopsis Description

At1g06070 [Source:UniProtKB/TrEMBL;Acc:Q9LNE0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.