CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003180_P001	Maize	nucleus	86.77	88.89
TraesCS2A01G352100.1	Wheat	nucleus	68.52	69.44
HORVU2Hr1G085560.4	Barley	nucleus, plastid	67.99	66.58
Bra030637.1-P	Field mustard	nucleus	47.09	46.72
CDY15560	Canola	nucleus	46.83	46.46
CDY47713	Canola	nucleus	48.15	46.43
EER99183	Sorghum	nucleus	48.15	46.43
Bra015471.1-P	Field mustard	nucleus	48.15	46.43
GSMUA_Achr11P...	Banana	nucleus	45.5	45.99
CDY10170	Canola	nucleus	47.62	45.8
Bra018250.1-P	Field mustard	nucleus	45.24	45.72
CDY10799	Canola	nucleus	44.71	45.55
CDX86537	Canola	nucleus	47.09	45.29
GSMUA_AchrUn_...	Banana	nucleus	47.35	44.86
KRH29611	Soybean	nucleus	45.5	44.68
CDY56611	Canola	nucleus	43.39	44.57
KRH10117	Soybean	nucleus	49.21	44.29
KRH23219	Soybean	nucleus	50.0	44.16
CDY15381	Canola	nucleus	43.12	44.05
KRH24606	Soybean	nucleus	46.03	43.83
AT2G31370.6	Thale cress	nucleus	46.03	43.72
CDY19094	Canola	nucleus	36.77	43.71
Solyc06g053350.2.1	Tomato	plastid	50.0	43.55
AT1G06070.1	Thale cress	nucleus	48.68	43.5
GSMUA_Achr5P25700_001	Banana	nucleus	40.48	43.1
VIT_05s0102g01120.t01	Wine grape	nucleus	48.15	42.82
GSMUA_Achr11P...	Banana	nucleus	49.47	41.74
Bra021735.1-P	Field mustard	nucleus	36.77	41.0
EES14151	Sorghum	nucleus	39.68	39.27
EES08023	Sorghum	nucleus	35.19	39.12
OQU92641	Sorghum	nucleus	33.6	36.39
EES15709	Sorghum	nucleus	32.8	35.53
OQU92255	Sorghum	nucleus	27.25	33.77
OQU90478	Sorghum	nucleus	33.07	33.07
KXG40277	Sorghum	nucleus	31.48	27.61
EES01493	Sorghum	nucleus	20.11	27.54
EES04836	Sorghum	nucleus	18.78	27.41
EES15257	Sorghum	nucleus	31.48	24.19
EER97061	Sorghum	nucleus	28.04	21.2
OQU89248	Sorghum	nucleus	12.17	19.09
KXG28232	Sorghum	mitochondrion	17.99	18.99
KXG23197	Sorghum	mitochondrion	17.72	18.56
EES00074	Sorghum	nucleus, plastid	20.11	18.45
EES06922	Sorghum	nucleus	12.7	14.86
OQU83785	Sorghum	plastid	15.34	8.98
OQU83493	Sorghum	nucleus	17.2	8.51

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8075875	UniProt:C5YBG0	ncoils:Coil	EnsemblPlants:EES12438
ProteinID:EES12438	ProteinID:EES12438.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
PFAM:PF07716	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF79	SMART:SM00338	EnsemblPlantsGene:SORBI_3006G133700
SUPFAM:SSF57959	UniParc:UPI0001A87652	RefSeq:XP_002448110.1	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:49707514..49712306

Molecular Weight (calculated)

39815.3 Da

IEP (calculated)

6.049

GRAVY (calculated)

-0.589

Length

378 amino acids

Sequence
(BLAST)

001: MDQASPADPA ASCSASASPS PSASAAASAA ASASGDVAAM LPDSPPRRGA GHRRAQSEIL LGGAALPDDL TFDADLGVVG EACVAGDEDE EDEDEDEEGG
101: GGGAGGSRMF EMFLENGGTL AGPSAHPHPA ATATPPPRPR HQHSMSMDGS TSLLGSAAAG TPGRAGADAK KAISDAKLAE LALVDPKRAK RILANRQSAA
201: RSKERKMRYI AELERKVQNL QSEATTLSAQ LAMLQRDTTG LTSENSDLKV RVQTMEQQVR LQDALNDRLR DEIQQLKVAT GQVNANIGKM GNFSMSSFGG
301: NPQSYQRSHI QSLLAAQQLQ QLQIHSQHQQ QQTHLQQQHQ LLQEAHPFPV DLKMRGFAMS SHAQNAGASD SHAVKSEP

Best Arabidopsis Sequence Match ( AT2G31370.5 )
(BLAST)

001: MDKEKSPAPP CGGLPPPSPS GRCSAFSEAG PIGHGSDANR MSHDISRMLD NPPKKIGHRR AHSEILTLPD DLSFDSDLGV VGNAADGASF SDETEEDLLS
101: MYLDMDKFNS SATSSAQVGE PSGTAWKNET MMQTGTGSTS NPQNTVNSLG ERPRIRHQHS QSMDGSMNIN EMLMSGNEDD SAIDAKKSMS ATKLAELALI
201: DPKRAKRIWA NRQSAARSKE RKTRYIFELE RKVQTLQTEA TTLSAQLTLL QRDTNGLTVE NNELKLRLQT MEQQVHLQDE LNEALKEEIQ HLKVLTGQVA
301: PSALNYGSFG SNQQQFYSNN QSMQTILAAK QFQQLQIHSQ KQQQQQQQQQ HNSISFNSNR CNSLCSSGFN SKNNKME

Arabidopsis Description

POSF21AT2G31370 protein [Source:UniProtKB/TrEMBL;Acc:B9DGB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.