Factsheet for Solyc06g053350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g01120.t01	Wine grape	nucleus	72.35	73.88
KRH10117	Soybean	nucleus	69.12	71.43
KRH23219	Soybean	nucleus	68.43	69.39
Bra030637.1-P	Field mustard	nucleus	59.91	68.24
CDY15560	Canola	nucleus	59.22	67.45
CDX86537	Canola	nucleus	60.83	67.18
Bra018250.1-P	Field mustard	nucleus	57.14	66.31
CDY10799	Canola	nucleus	56.68	66.31
AT1G06070.1	Thale cress	nucleus	64.29	65.96
CDY56611	Canola	nucleus	55.76	65.76
CDY10170	Canola	nucleus	59.45	65.65
Bra015471.1-P	Field mustard	nucleus	59.22	65.56
CDY47713	Canola	nucleus	58.99	65.31
AT2G31370.6	Thale cress	nucleus	58.99	64.32
CDY15381	Canola	nucleus	53.92	63.24
CDY19094	Canola	nucleus	45.62	62.26
Zm00001d021189_P001	Maize	nucleus	50.69	59.46
GSMUA_Achr11P...	Banana	nucleus	51.15	59.36
Zm00001d006127_P003	Maize	nucleus	50.0	58.49
GSMUA_Achr5P25700_001	Banana	nucleus	47.7	58.31
Bra021735.1-P	Field mustard	nucleus	45.39	58.11
EER99183	Sorghum	nucleus	52.07	57.65
GSMUA_AchrUn_...	Banana	nucleus	52.53	57.14
Os09t0516200-01	Rice	nucleus	50.0	57.11
TraesCS5D01G308600.1	Wheat	nucleus	48.62	56.12
TraesCS5B01G301900.1	Wheat	nucleus	48.39	55.7
TraesCS5A01G299400.1	Wheat	nucleus	48.39	55.7
GSMUA_Achr11P...	Banana	nucleus	56.22	54.46
HORVU7Hr1G056230.2	Barley	nucleus	44.47	52.88
TraesCS7A01G266400.1	Wheat	nucleus	44.01	52.33
TraesCS7B01G166100.1	Wheat	nucleus	44.24	51.89
TraesCS7D01G268400.1	Wheat	nucleus	42.86	50.54
TraesCS2A01G352100.1	Wheat	nucleus	43.32	50.4
EES12438	Sorghum	nucleus	43.55	50.0
Zm00001d003180_P001	Maize	nucleus	41.94	49.32
EES14151	Sorghum	nucleus	43.32	49.21
Zm00001d052717_P001	Maize	nucleus	43.32	49.09
Zm00001d031697_P001	Maize	nucleus	28.11	49.0
HORVU5Hr1G079160.11	Barley	vacuole	49.08	47.87
HORVU2Hr1G085560.4	Barley	nucleus, plastid	42.17	47.41
Solyc06g060490.2.1	Tomato	nucleus	29.49	46.21
Solyc06g049040.2.1	Tomato	nucleus	31.57	41.39
Solyc04g071160.2.1	Tomato	nucleus	31.57	40.18
Solyc06g048630.2.1	Tomato	nucleus	30.88	38.4
Solyc04g081190.2.1	Tomato	nucleus	31.57	30.86
Solyc01g110480.2.1	Tomato	nucleus	38.02	28.35
Solyc12g010800.1.1	Tomato	nucleus	18.43	26.14
Solyc07g053450.2.1	Tomato	nucleus	15.9	24.3
Solyc07g062710.2.1	Tomato	nucleus, plastid	16.59	23.84
Solyc11g006490.1.1	Tomato	nucleus	13.13	18.57
Solyc11g020950.1.1	Tomato	nucleus	13.36	17.79
Solyc10g044830.1.1	Tomato	nucleus	8.29	14.57

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:K4C622	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF80
SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc06g053350.2	EnsemblPlants:Solyc06g053350.2.1	UniParc:UPI000276749E	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:36098734..36105846

Molecular Weight (calculated)

47525.4 Da

IEP (calculated)

6.411

GRAVY (calculated)

-0.766

Length

434 amino acids

Sequence
(BLAST)

001: MDKDKSSSSH IGGSLPPSGR YSLFSPPGSS SNVKSEQPGL ANLPPLGPGN ASESGHFGHG LSADSSLFSL DISRMSDNPP RKFGHRRAHS EILTLPDDIS
101: FDSDLGVVGL DGPSLSDETE EDILSMYLDM DKFNSSTLSS EFQVGESSSA APGSSQTTAM ASGTNKFAPT VSEKPRVRHQ HSQSMDGSTT IKPEMLMSGV
201: EEPSSAETKK ATSAAKLAEL ALIDPKRAKR IWANRQSAAR SKERKMRYIA ELERKVQTLQ TEATTLSTQL TLLQRDTNGL NAENSELKLR LQTMEQQVHL
301: QDALNDALKE EIQHLKVLTG QGIANGGPMM NFPATFGGNQ QFYSNNQAMH TLLAAQQLQQ LQLHSHKQQH QFQQHQLHQF QQQQLQHQQQ QQQPLMQQQQ
401: QQDQLSQAGD VMSRGSLSSP QNENASDVSS VAKD

Best Arabidopsis Sequence Match ( AT1G06070.1 )
(BLAST)

001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD

Arabidopsis Description

At1g06070 [Source:UniProtKB/TrEMBL;Acc:Q9LNE0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.