Factsheet for Solyc12g010800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc02g089420.1.1
Solyc03g005240.1.1
Solyc03g046440.1.1
Solyc04g071160.2.1
Solyc06g053930.2.1
Solyc06g060490.2.1
Solyc07g053450.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g010800.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58120.1	Solyc04g071160.2.1	AT1G43700.1	17719007
AT3G58120.1	Solyc06g060490.2.1	AT1G43700.1	17719007
AT3G58120.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT3G58120.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT3G58120.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT3G58120.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT3G58120.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT3G58120.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT3G58120.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT3G58120.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT3G58120.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT3G58120.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT3G58120.1	Solyc07g053450.2.1	AT3G58120.1	17719007
AT3G58120.1	Solyc12g010800.1.1	AT3G58120.1	17719007
AT3G58120.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT3G58120.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT3G58120.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT3G58120.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT3G58120.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT3G58120.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT3G58120.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT3G58120.1	Solyc02g089420.1.1	AT5G38800.1	17719007
AT3G58120.1	Solyc03g046440.1.1	AT5G38800.1	17719007

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020206	Potato	nucleus	95.75	96.07
CDX71974	Canola	nucleus, plastid	51.96	59.55
Solyc07g053450.2.1	Tomato	nucleus	54.58	58.8
CDY06053	Canola	nucleus	53.92	58.1
CDY64520	Canola	nucleus, plastid	51.31	57.51
CDY22561	Canola	nucleus, plastid	50.33	57.46
CDY35379	Canola	nucleus, plastid	50.0	57.09
CDY56238	Canola	extracellular	24.84	56.72
CDX71000	Canola	nucleus, plastid	51.31	56.27
KRH22317	Soybean	nucleus	57.19	56.27
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	53.92	55.93
CDX79872	Canola	nucleus, plastid	50.65	55.36
KRH27013	Soybean	nucleus	57.19	54.69
CDX98266	Canola	nucleus, plastid	52.61	54.03
Bra003320.1-P	Field mustard	nucleus	52.94	53.29
Bra004689.1-P	Field mustard	nucleus, plastid	53.27	53.27
AT3G58120.1	Thale cress	nucleus	56.21	52.28
Bra007380.1-P	Field mustard	nucleus	54.25	52.2
KRH25692	Soybean	nucleus, plastid	55.88	51.82
AT2G42380.2	Thale cress	nucleus, plastid	53.92	51.4
KRH55826	Soybean	nucleus, plastid	56.86	51.18
Solyc07g062710.2.1	Tomato	nucleus, plastid	50.33	50.99
Bra000256.1-P	Field mustard	nucleus, plastid	48.37	40.88
Solyc11g006490.1.1	Tomato	nucleus	23.2	23.13
Solyc06g049040.2.1	Tomato	nucleus	23.53	21.75
Solyc06g060490.2.1	Tomato	nucleus	19.61	21.66
Solyc06g048630.2.1	Tomato	nucleus	23.86	20.92
Solyc11g020950.1.1	Tomato	nucleus	22.22	20.86
Solyc04g071160.2.1	Tomato	nucleus	21.57	19.35
Solyc10g044830.1.1	Tomato	nucleus	15.36	19.03
Solyc06g053350.2.1	Tomato	plastid	26.14	18.43
Solyc04g081190.2.1	Tomato	nucleus	25.16	17.34
Solyc01g110480.2.1	Tomato	nucleus	26.14	13.75

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045893	InterPro:IPR004827	UniProt:K4DCG7	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR13301	PANTHER:PTHR13301:SF134	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc12g010800.1
EnsemblPlants:Solyc12g010800.1.1	UniParc:UPI0002769FED	InterPro:bZIP	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:3715930..3717269

Molecular Weight (calculated)

34995.8 Da

IEP (calculated)

5.441

GRAVY (calculated)

-0.926

Length

306 amino acids

Sequence
(BLAST)

001: MAHLPPRAPN MTQNWPDFSL HQKMENLAPS AHNLWADEFL DMSSRRGSHR RSMSDSIAFL ESPMVEECRR LSSTTPGSGG TTNGHDEFER FDDEQQIMSM
101: FNDDVHDMSC SNPSSPSDYI NVTEDKKMNG PDQMMMQRKS DQNEEVESSC KTNEELATAN QNASTNNNEY SSERVVDPKR IKRILANRQS AQRSRVRKLQ
201: YVSELERSVT TLQAEVSVLS PRVAFLDHQR LLLNVDNSAL RQKIAALAQD KLFKDAHQEA LKVEIERLRQ IYYQQNMKQQ MDNNNTTPVA DSTNTPPEIK
301: VQLSEN

Best Arabidopsis Sequence Match ( AT3G58120.1 )
(BLAST)

001: MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDV
101: HNNNHNHHHH HSINGNVGPT RSSSNTSTPS DHNSLSDDDN NKEAPPSDHD HHMDNNVANQ NNAAGNNYNE SDEVQSQCKT EPQDGPSANQ NSGGSSGNRI
201: HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ
301: SLKKMENNVS DQSPADIKPS VEKEQLLNV

Arabidopsis Description

BZIP61BZIP61 [Source:UniProtKB/TrEMBL;Acc:A0A178VLL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.