CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71974
CDX73678
CDX80722
CDX92401
CDX95314
CDX98266
CDY06053
CDY06478
CDY23174
CDY30752
CDY48943
CDY56238
CDY71925

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58120.1	CDX80722	AT1G43700.1	17719007
AT3G58120.1	CDY30752	AT1G43700.1	17719007
AT3G58120.1	CDY48943	AT1G43700.1	17719007
AT3G58120.1	CDY71925	AT1G43700.1	17719007
AT3G58120.1	CDX73678	AT3G51920.1	17360592
AT3G58120.1	CDX95314	AT3G51920.1	17360592
AT3G58120.1	CDY23174	AT3G51920.1	17360592
AT3G58120.1	CDX71974	AT3G58120.1	17719007
AT3G58120.1	CDX98266	AT3G58120.1	17719007
AT3G58120.1	CDY06053	AT3G58120.1	17719007
AT3G58120.1	CDY56238	AT3G58120.1	17719007
AT3G58120.1	CDY06478	AT4G14640.1	17360592
AT3G58120.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003320.1-P	Field mustard	nucleus	95.3	93.42
CDX71974	Canola	nucleus, plastid	81.88	91.39
CDY06053	Canola	nucleus	85.23	89.44
CDY56238	Canola	extracellular	37.92	84.33
AT3G58120.1	Thale cress	nucleus	88.59	80.24
CDY35379	Canola	nucleus, plastid	66.78	74.25
CDY22561	Canola	nucleus, plastid	66.44	73.88
CDX71000	Canola	nucleus, plastid	67.11	71.68
CDX79872	Canola	nucleus, plastid	67.11	71.43
CDY64520	Canola	nucleus, plastid	65.44	71.43
KRH22317	Soybean	nucleus	63.42	60.77
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	59.4	60.0
KRH27013	Soybean	nucleus	64.09	59.69
PGSC0003DMT400024289	Potato	nucleus	57.38	56.44
KRH25692	Soybean	nucleus, plastid	62.08	56.06
KRH55826	Soybean	nucleus, plastid	63.09	55.29
Solyc12g010800.1.1	Tomato	nucleus	54.03	52.61
PGSC0003DMT400020206	Potato	nucleus	53.36	52.13
Solyc07g053450.2.1	Tomato	nucleus	49.33	51.76
CDY23807	Canola	nucleus	27.18	24.11
CDY46864	Canola	nucleus	26.85	23.95
CDY48943	Canola	nucleus	17.45	21.58
CDY29162	Canola	nucleus	26.85	21.39
CDY39913	Canola	nucleus	26.51	21.29
CDY44883	Canola	mitochondrion, nucleus	21.81	21.24
CDY35020	Canola	nucleus	12.42	21.02
CDX70198	Canola	mitochondrion, nucleus	21.48	20.85
CDX86512	Canola	nucleus	21.81	20.44
CDY06231	Canola	nucleus	22.15	20.31
CDY15590	Canola	nucleus	21.81	20.25
CDY19094	Canola	nucleus	21.48	20.13
CDY09952	Canola	nucleus	22.15	20.12
CDY48939	Canola	nucleus	20.13	19.42
CDX80722	Canola	nucleus	20.81	19.25
CDY15560	Canola	nucleus	24.16	18.9
CDY15381	Canola	nucleus	23.15	18.65
CDY10799	Canola	nucleus	23.15	18.6
CDX86537	Canola	nucleus	24.5	18.58
CDY56611	Canola	nucleus	22.82	18.48
CDY30752	Canola	nucleus	20.13	18.18
CDX80717	Canola	nucleus, plastid	19.46	18.12
CDY71925	Canola	nucleus	15.44	18.11
CDY24896	Canola	nucleus	20.47	17.99
CDY06974	Canola	nucleus	20.81	17.61
CDY47713	Canola	nucleus	23.15	17.6
CDY10170	Canola	nucleus	23.15	17.56
CDX93167	Canola	nucleus	20.13	17.49
CDY23889	Canola	nucleus	20.81	17.46
CDY13830	Canola	nucleus, plastid	17.79	17.26
CDX79976	Canola	nucleus	20.47	17.13
CDX82008	Canola	nucleus	19.13	15.32
CDY07597	Canola	nucleus	17.11	15.27
CDY12108	Canola	nucleus	21.48	15.02
CDX72732	Canola	nucleus	22.15	14.97
CDY15909	Canola	plastid	22.15	14.86
CDX99610	Canola	nucleus	21.81	14.71
CDY22407	Canola	nucleus	21.81	14.61
CDX90298	Canola	nucleus	20.81	14.16
CDY13828	Canola	plastid	18.12	13.95
CDY70502	Canola	nucleus	17.79	13.73
CDX82009	Canola	plastid	17.45	13.58
CDY13829	Canola	cytosol	0.34	9.09

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078EAQ2	EnsemblPlants:CDX98266	ProteinID:CDX98266	ProteinID:CDX98266.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00105790001	InterPro:IPR004827	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR13301	PANTHER:PTHR13301:SF134	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0004EEF23C	InterPro:bZIP	SEG:seg	:	:	:

Description

BnaC06g16270D

Coordinates

chrLK031904:-:200685..202737

Molecular Weight (calculated)

33517.9 Da

IEP (calculated)

7.018

GRAVY (calculated)

-0.889

Length

298 amino acids

Sequence
(BLAST)

001: MAQLPPKIPT MTTTTPHWPD FSSQKLPSIA ATAAATAGQQ NPSWMDEFLD FSTTRRGTHR RSISDSIAFL ETPSSGVGSH HFDRFDDEQF MSMFNDDVHQ
101: NHNNQHNNNV GPTHPLSADH NRMDTTPIPS NVAGNDNNET DEVQSQCKTE PQDGPSLNQD SGGSSGNRIH DPKRVKRILA NRQSAQRSRV RKLQYISELE
201: RSVTSLQTEV SVLSPRVAFL DHQRLLLNVD NSAIKQRIAA LAQDKIFKDA HQEALKREIE RLRQVYHQQS LKKMENNVSD QSPADIKPSV EKEQLLNA

Best Arabidopsis Sequence Match ( AT3G58120.1 )
(BLAST)

001: MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDV
101: HNNNHNHHHH HSINGNVGPT RSSSNTSTPS DHNSLSDDDN NKEAPPSDHD HHMDNNVANQ NNAAGNNYNE SDEVQSQCKT EPQDGPSANQ NSGGSSGNRI
201: HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ
301: SLKKMENNVS DQSPADIKPS VEKEQLLNV

Arabidopsis Description

BZIP61BZIP61 [Source:UniProtKB/TrEMBL;Acc:A0A178VLL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.