Factsheet for Solyc07g053450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc02g089420.1.1
Solyc03g005240.1.1
Solyc03g046440.1.1
Solyc04g071160.2.1
Solyc06g053930.2.1
Solyc06g060490.2.1
Solyc07g053450.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g010800.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58120.1	Solyc04g071160.2.1	AT1G43700.1	17719007
AT3G58120.1	Solyc06g060490.2.1	AT1G43700.1	17719007
AT3G58120.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT3G58120.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT3G58120.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT3G58120.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT3G58120.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT3G58120.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT3G58120.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT3G58120.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT3G58120.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT3G58120.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT3G58120.1	Solyc07g053450.2.1	AT3G58120.1	17719007
AT3G58120.1	Solyc12g010800.1.1	AT3G58120.1	17719007
AT3G58120.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT3G58120.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT3G58120.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT3G58120.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT3G58120.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT3G58120.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT3G58120.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT3G58120.1	Solyc02g089420.1.1	AT5G38800.1	17719007
AT3G58120.1	Solyc03g046440.1.1	AT5G38800.1	17719007

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024289	Potato	nucleus	84.51	79.21
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	59.86	57.63
CDY64520	Canola	nucleus, plastid	52.82	54.95
Solyc12g010800.1.1	Tomato	nucleus	58.8	54.58
CDX71000	Canola	nucleus, plastid	53.52	54.48
CDX79872	Canola	nucleus, plastid	53.52	54.29
CDY22561	Canola	nucleus, plastid	50.7	53.73
CDY35379	Canola	nucleus, plastid	50.35	53.36
Bra004689.1-P	Field mustard	nucleus, plastid	57.04	52.94
CDX71974	Canola	nucleus, plastid	49.65	52.81
KRH22317	Soybean	nucleus	57.04	52.09
CDY06053	Canola	nucleus	51.76	51.76
KRH27013	Soybean	nucleus	58.1	51.56
KRH25692	Soybean	nucleus, plastid	58.45	50.3
KRH55826	Soybean	nucleus, plastid	60.21	50.29
AT2G42380.2	Thale cress	nucleus, plastid	56.69	50.16
CDX98266	Canola	nucleus, plastid	51.76	49.33
AT3G58120.1	Thale cress	nucleus	55.99	48.33
Bra003320.1-P	Field mustard	nucleus	51.41	48.03
Solyc07g062710.2.1	Tomato	nucleus, plastid	51.06	48.01
Bra007380.1-P	Field mustard	nucleus	53.52	47.8
CDY56238	Canola	extracellular	21.83	46.27
Bra000256.1-P	Field mustard	nucleus, plastid	53.52	41.99
Solyc11g006490.1.1	Tomato	nucleus	26.41	24.43
Solyc06g060490.2.1	Tomato	nucleus	21.83	22.38
Solyc06g049040.2.1	Tomato	nucleus	22.89	19.64
Solyc11g020950.1.1	Tomato	nucleus	22.54	19.63
Solyc06g048630.2.1	Tomato	nucleus	22.89	18.62
Solyc04g071160.2.1	Tomato	nucleus	21.83	18.18
Solyc10g044830.1.1	Tomato	nucleus	15.49	17.81
Solyc06g053350.2.1	Tomato	plastid	24.3	15.9
Solyc04g081190.2.1	Tomato	nucleus	23.94	15.32
Solyc01g110480.2.1	Tomato	nucleus	26.06	12.71

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045893	InterPro:IPR004827	UniProt:K4CFP2	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR13301	PANTHER:PTHR13301:SF134	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc07g053450.2	EnsemblPlants:Solyc07g053450.2.1
UniParc:UPI000276BE30	InterPro:bZIP	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:61895593..61897536

Molecular Weight (calculated)

32722.0 Da

IEP (calculated)

6.194

GRAVY (calculated)

-0.909

Length

284 amino acids

Sequence
(BLAST)

001: MAHLPPRAPN MTQNWPNFSP HQKIETITIS HHHHQNNPSW VDEFLDFSSS KRGSHRRSIS DSIAFLEAPM VEECRIIRLS SSGTRTEFDR FDDDQLMSMF
101: NDEDTANNNE RNSIPSSPSD HNSINYEEKK LILHVEEQQQ QLKIEPEEVE SSCKSDNEQN AAADHDDHVD NSSEKIIDPK RIKRILANRQ SAQRSRVRKL
201: QYISELERSV TTLQAEVSVL SPRVAFLDHQ RLVLNVDNSV LKQRIAALAQ DKIFKDVHSS RSIEERNREV KGNILPTELK EDGK

Best Arabidopsis Sequence Match ( AT2G42380.2 )
(BLAST)

001: MAQLPPKIPN MTQHWPDFSS QKLSPFSTPT ATAVATATTT VQNPSWVDEF LDFSASRRGN HRRSISDSIA FLEAPTVSIE DHQFDRFDDE QFMSMFTDDD
101: NLHSNPSHIN NKNNNVGPTG SSSNTSTPSN SFNDDNKELP PSDHNMNNNI NNNYNDEVQS QCKMEPEDGT ASNNNSGDSS GNRILDPKRV KRILANRQSA
201: QRSRVRKLQY ISELERSVTS LQAEVSVLSP RVAFLDHQRL LLNVDNSALK QRIAALSQDK LFKDAHQEAL KREIERLRQV YNQQSLTNVE NANHLSATGA
301: GATPAVDIKS SVETEQLLNV S

Arabidopsis Description

BZIP34Basic leucine zipper 34 [Source:UniProtKB/Swiss-Prot;Acc:F4IN23]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.