Factsheet for Solyc03g046440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc02g089420.1.1
Solyc03g005240.1.1
Solyc03g046440.1.1
Solyc04g005170.1.1
Solyc06g053930.2.1
Solyc07g053450.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g010800.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G30530.1	Solyc04g005170.1.1	AT1G13600.1	16709202
AT3G30530.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT3G30530.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT3G30530.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT3G30530.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT3G30530.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT3G30530.1	Solyc02g089420.1.1	AT3G30530.1	16709202
AT3G30530.1	Solyc03g046440.1.1	AT3G30530.1	16709202
AT5G15830.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT5G15830.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT5G15830.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT5G15830.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT5G15830.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT5G15830.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G15830.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G15830.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G15830.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G15830.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT5G15830.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT5G15830.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT5G15830.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT5G15830.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT5G15830.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT5G15830.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT5G15830.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT5G38800.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT5G38800.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT5G38800.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT5G38800.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT5G38800.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT5G38800.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G38800.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G38800.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G38800.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G38800.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT5G38800.1	Solyc07g053450.2.1	AT3G58120.1	17719007
AT5G38800.1	Solyc12g010800.1.1	AT3G58120.1	17719007
AT5G38800.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT5G38800.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT5G38800.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT5G38800.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT5G38800.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT5G38800.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT5G38800.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT5G38800.1	Solyc02g089420.1.1	AT5G38800.1	17719007
AT5G38800.1	Solyc03g046440.1.1	AT5G38800.1	17719007

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089420.1.1	Tomato	nucleus	59.54	57.22
VIT_14s0083g00700.t01	Wine grape	nucleus	50.29	43.94
AT3G30530.1	Thale cress	nucleus	42.2	42.2
CDY66911	Canola	nucleus	41.62	41.86
CDX85297	Canola	nucleus	41.62	41.86
KRH01443	Soybean	nucleus	46.24	41.03
KRH45160	Soybean	nucleus	45.09	40.41
CDY35775	Canola	nucleus	39.88	40.35
AT5G38800.1	Thale cress	nucleus	37.57	39.39
Bra020735.1-P	Field mustard	nucleus	38.73	39.18
Bra025418.1-P	Field mustard	nucleus	38.15	38.37
CDY26467	Canola	nucleus	40.46	38.25
CDX69495	Canola	nucleus	39.88	37.7
AT5G15830.1	Thale cress	nucleus	40.46	37.63
Bra008670.1-P	Field mustard	nucleus	39.31	37.16
Bra006324.1-P	Field mustard	nucleus	38.73	37.02
Bra023540.1-P	Field mustard	nucleus	39.31	36.17
CDX85530	Canola	nucleus	39.31	36.17
KRG93749	Soybean	nucleus	45.66	35.91
CDX90970	Canola	nucleus	39.31	35.05
GSMUA_Achr8P23510_001	Banana	nucleus	32.37	34.78
KRH18312	Soybean	nucleus	42.77	34.58
EES07324	Sorghum	nucleus	33.53	34.32
GSMUA_Achr9P14690_001	Banana	nucleus	30.64	33.97
Os02t0728001-00	Rice	nucleus	32.95	33.73
GSMUA_Achr6P36230_001	Banana	nucleus	34.1	33.71
CDX70656	Canola	nucleus	36.99	33.68
CDX78655	Canola	nucleus	37.57	33.68
Solyc04g005170.1.1	Tomato	nucleus	36.99	33.51
Zm00001d017911_P001	Maize	nucleus	33.53	32.95
CDX70639	Canola	nucleus	36.42	32.81
Zm00001d052807_P001	Maize	nucleus	25.43	31.21
Zm00001d051739_P001	Maize	nucleus	26.59	30.67
TraesCS7B01G293700.1	Wheat	nucleus	28.32	29.34
Zm00001d015664_P001	Maize	nucleus	28.32	29.17
EES06428	Sorghum	nucleus	28.9	28.25
TraesCS7B01G293900.1	Wheat	nucleus	27.17	28.14
GSMUA_Achr5P05350_001	Banana	nucleus	26.59	28.05
TraesCS6B01G198700.1	Wheat	nucleus	28.32	27.68
Os09t0474000-01	Rice	nucleus	27.17	27.17
HORVU2Hr1G098530.1	Barley	nucleus	27.75	27.12
TraesCS5A01G250400.1	Wheat	nucleus	30.64	27.04
EER96905	Sorghum	nucleus	28.9	26.88
Zm00001d005962_P001	Maize	nucleus, plastid	25.43	26.83
TraesCS6D01G160200.1	Wheat	nucleus	27.17	26.7
TraesCS6D01G270000.1	Wheat	nucleus	30.64	26.63
TraesCS7B01G118500.1	Wheat	nucleus	28.32	26.63
HORVU1Hr1G013620.1	Barley	nucleus	27.75	26.37
Zm00001d031272_P001	Maize	nucleus	30.64	26.24
Zm00001d020823_P001	Maize	nucleus	29.48	26.15
Zm00001d053703_P001	Maize	nucleus	26.59	26.14
HORVU6Hr1G072490.1	Barley	nucleus	29.48	26.02
TraesCS5B01G248400.1	Wheat	nucleus	28.9	25.91
Os02t0191600-00	Rice	nucleus	29.48	25.63
TraesCS6B01G318700.1	Wheat	nucleus	30.64	25.6
TraesCS7D01G213200.1	Wheat	nucleus	27.17	25.54
TraesCS6A01G170600.1	Wheat	nucleus	26.01	25.42
TraesCS5D01G258000.1	Wheat	nucleus	27.75	24.87
TraesCS7A01G211500.1	Wheat	nucleus	26.59	24.86
HORVU5Hr1G070540.1	Barley	nucleus	27.17	24.48
HORVU7Hr1G043080.1	Barley	nucleus	27.17	24.23
TraesCS7A01G181100.1	Wheat	nucleus	30.06	23.96
KXG19789	Sorghum	nucleus	26.01	23.94
TraesCS6A01G288900.1	Wheat	nucleus	28.32	23.79
Zm00001d037360_P001	Maize	nucleus	27.17	23.74
Os08t0487100-01	Rice	nucleus	31.21	23.48
CDX70638	Canola	nucleus	21.97	23.46
TraesCS7B01G086100.1	Wheat	nucleus	29.48	22.87
CDX70640	Canola	nucleus	20.81	22.64
TraesCS7D01G182900.1	Wheat	nucleus	28.9	22.62
HORVU7Hr1G037230.2	Barley	nucleus	28.9	22.52
KXG25724	Sorghum	nucleus	30.06	22.51
Zm00001d046664_P001	Maize	nucleus	23.12	21.39
KXG20422	Sorghum	nucleus	23.7	20.71
HORVU6Hr1G034810.1	Barley	nucleus	24.28	19.63
TraesCS7A01G391800.1	Wheat	mitochondrion	22.54	16.12

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:K4BGF4	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF365	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc03g046440.1
EnsemblPlants:Solyc03g046440.1.1	UniParc:UPI0002768743	InterPro:bZIP	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:12784936..12785728

Molecular Weight (calculated)

20278.8 Da

IEP (calculated)

6.626

GRAVY (calculated)

-1.016

Length

173 amino acids

Sequence
(BLAST)

001: MQSTNVTELY YNPAQYNYTP TFHDQSINRI PSPLYHLQIG PPIQQLNSQS TYFNTNNSTC DEIDELINER KKRRMISNRE SARRSRMRKQ KHLNELWAQV
101: NCLRNENHLL LNKLNHVSKI HDQVLEENAQ LKEETAGLRQ IVTNMHLMDG PNYPLKEIQL DDDEPCSGSS QNE

Best Arabidopsis Sequence Match ( AT3G30530.1 )
(BLAST)

001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE

Arabidopsis Description

ATBZIP42BZIP42 [Source:UniProtKB/TrEMBL;Acc:A0A178VMH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.