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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68131
CDX85297
CDX85411
CDX85891
CDX86233
CDX98108
CDY16099
CDY35775
CDY37559
CDY39029
CDY45336
CDY49605
CDY52079
CDY66911

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G30530.1 CDX98108 AT1G13600.1 16709202
AT3G30530.1 CDY16099 AT1G13600.1 16709202
AT3G30530.1 CDY37559 AT1G13600.1 16709202
AT3G30530.1 CDY45336 AT1G13600.1 16709202
AT3G30530.1 CDX68131 AT1G75390.1 16709202
AT3G30530.1 CDX85891 AT1G75390.1 16709202
AT3G30530.1 CDY39029 AT1G75390.1 16709202
AT3G30530.1 CDY52079 AT1G75390.1 16709202
AT3G30530.1 CDX85297 AT3G30530.1 16709202
AT3G30530.1 CDY35775 AT3G30530.1 16709202
AT3G30530.1 CDY66911 AT3G30530.1 16709202
AT3G30530.1 CDX85411 AT5G49450.1 16709202
AT3G30530.1 CDX86233 AT5G49450.1 16709202
AT3G30530.1 CDY49605 AT5G49450.1 16709202
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra020735.1-P Field mustard nucleus 96.49 96.49
CDY66911 Canola nucleus 85.38 84.88
AT3G30530.1 Thale cress nucleus 66.67 65.9
CDX85297 Canola nucleus 63.74 63.37
Solyc02g089420.1.1 Tomato nucleus 48.54 46.11
PGSC0003DMT400003516 Potato nucleus 48.54 46.11
CDX69495 Canola nucleus 47.95 44.81
CDY26467 Canola nucleus 47.37 44.26
CDX70656 Canola nucleus 47.37 42.63
KRH45160 Soybean nucleus 47.95 42.49
CDY71548 Canola nucleus 42.11 42.35
CDX85530 Canola nucleus 46.2 42.02
VIT_14s0083g00700.t01 Wine grape nucleus 48.54 41.92
CDX78655 Canola nucleus 46.78 41.45
CDY48072 Canola nucleus 40.94 41.18
CDY16099 Canola nucleus 39.18 41.1
KRH01443 Soybean nucleus 46.78 41.03
CDX70639 Canola nucleus 45.61 40.62
CDX90970 Canola nucleus 45.61 40.21
Solyc03g046440.1.1 Tomato nucleus 40.35 39.88
CDY04169 Canola nucleus 40.35 39.2
CDY33124 Canola nucleus 40.35 39.2
KRH18312 Soybean nucleus 48.54 38.78
CDX99780 Canola nucleus 40.35 38.55
CDY46496 Canola nucleus 39.77 37.99
CDY37559 Canola nucleus 43.86 37.88
CDY45336 Canola nucleus 43.86 37.88
CDX98108 Canola nucleus 43.86 37.88
KRG93749 Soybean nucleus 47.37 36.82
GSMUA_Achr9P14690_001 Banana nucleus 32.75 35.9
CDY45843 Canola nucleus 25.15 35.83
CDX81569 Canola nucleus 24.56 35.0
Zm00001d052807_P001 Maize nucleus 28.07 34.04
GSMUA_Achr8P23510_001 Banana nucleus 31.58 33.54
Os02t0728001-00 Rice nucleus 32.75 33.14
EES07324 Sorghum nucleus 32.16 32.54
Zm00001d017911_P001 Maize nucleus 32.16 31.25
GSMUA_Achr6P36230_001 Banana nucleus 30.99 30.29
Os09t0474000-01 Rice nucleus 30.41 30.06
HORVU5Hr1G070540.1 Barley nucleus 33.33 29.69
Zm00001d051739_P001 Maize nucleus 25.73 29.33
Zm00001d015664_P001 Maize nucleus 28.07 28.57
CDX70638 Canola nucleus 26.9 28.4
EES06428 Sorghum nucleus 29.24 28.25
CDY42835 Canola nucleus 29.24 28.25
CDY40812 Canola nucleus 29.24 28.25
GSMUA_Achr5P05350_001 Banana nucleus 26.9 28.05
TraesCS7B01G118500.1 Wheat nucleus 29.82 27.72
TraesCS7D01G213200.1 Wheat nucleus 29.82 27.72
TraesCS7A01G211500.1 Wheat nucleus 29.82 27.57
TraesCS7B01G293900.1 Wheat nucleus 26.9 27.54
Zm00001d005962_P001 Maize nucleus, plastid 26.32 27.44
Os02t0191600-00 Rice nucleus 31.58 27.14
TraesCS6B01G198700.1 Wheat nucleus 28.07 27.12
TraesCS5A01G250400.1 Wheat nucleus 30.99 27.04
EER96905 Sorghum nucleus 29.24 26.88
TraesCS5B01G248400.1 Wheat nucleus 29.24 25.91
TraesCS5D01G258000.1 Wheat nucleus 29.24 25.91
TraesCS7B01G293700.1 Wheat nucleus 25.15 25.75
TraesCS6A01G170600.1 Wheat nucleus 26.32 25.42
HORVU1Hr1G013620.1 Barley nucleus 26.9 25.27
Zm00001d020823_P001 Maize nucleus 28.66 25.13
TraesCS6D01G160200.1 Wheat nucleus 25.73 25.0
TraesCS6B01G318700.1 Wheat nucleus 29.82 24.64
TraesCS6D01G270000.1 Wheat nucleus 28.66 24.62
CDX70640 Canola nucleus 22.81 24.53
HORVU6Hr1G072490.1 Barley nucleus 28.07 24.49
CDY51629 Canola nucleus 26.9 24.34
CDY02193 Canola nucleus 25.73 24.04
Os08t0487100-01 Rice nucleus 32.16 23.91
HORVU2Hr1G098530.1 Barley nucleus 24.56 23.73
TraesCS7A01G181100.1 Wheat nucleus 29.82 23.5
CDY66792 Canola nucleus 22.22 23.17
KXG25724 Sorghum nucleus 30.99 22.94
Zm00001d031272_P001 Maize nucleus 26.9 22.77
HORVU7Hr1G043080.1 Barley nucleus 25.73 22.68
TraesCS7D01G182900.1 Wheat nucleus 29.24 22.62
HORVU7Hr1G037230.2 Barley nucleus 29.24 22.52
TraesCS6A01G288900.1 Wheat nucleus 26.9 22.33
Zm00001d053703_P001 Maize nucleus 22.81 22.16
CDX78324 Canola nucleus 21.64 21.76
CDX87188 Canola nucleus 27.49 21.56
TraesCS7B01G086100.1 Wheat nucleus 28.07 21.52
KXG19789 Sorghum nucleus 23.39 21.28
HORVU6Hr1G034810.1 Barley nucleus 25.73 20.56
Zm00001d046664_P001 Maize nucleus 22.22 20.32
KXG20422 Sorghum nucleus 23.39 20.2
Zm00001d037360_P001 Maize nucleus 23.39 20.2
CDY16837 Canola nucleus 25.15 19.46
TraesCS7A01G391800.1 Wheat mitochondrion 21.64 15.29
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1GO:A0A078HBJ0UniProt:A0A078HBJ0EnsemblPlants:CDY35775ProteinID:CDY35775
ProteinID:CDY35775.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00059232001InterPro:IPR004827PFAM:PF00170ScanProsite:PS00036PFscan:PS50217
PANTHER:PTHR22952PANTHER:PTHR22952:SF349SMART:SM00338SUPFAM:SSF57959UniParc:UPI0004EACC8BInterPro:bZIP
SEG:seg:::::
Description
BnaC02g38190DBnaC02g38190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBJ0]
Coordinates
chrLK032360:-:144291..144806
Molecular Weight (calculated)
19892.2 Da
IEP (calculated)
6.683
GRAVY (calculated)
-0.944
Length
171 amino acids
Sequence
(BLAST)
001: MQPQADVFSL HNYINSSNPS PYPSHFAVSP PYPINGQNLN PFYGIQSATN NPQSMSLSSN STSDEAEEQQ TDKNIINERK QRRMISNRES ARRSRMRKQR
101: HLDELWSQVM WFRVENHQLL DKLNNLSESH EKVLQENVQL KGETSELKQV ISDMKIQSPF SCFRDDIIPI E
Best Arabidopsis Sequence Match ( AT3G30530.1 )
(BLAST)
001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE
Arabidopsis Description
ATBZIP42BZIP42 [Source:UniProtKB/TrEMBL;Acc:A0A178VMH2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.