Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98108 | Canola | nucleus | 97.47 | 97.47 |
| CDY37559 | Canola | nucleus | 97.47 | 97.47 |
| Bra019715.1-P | Field mustard | nucleus | 94.95 | 97.41 |
| AT1G13600.1 | Thale cress | nucleus | 84.34 | 85.2 |
| CDY16099 | Canola | nucleus | 57.07 | 69.33 |
| CDY46496 | Canola | nucleus | 56.06 | 62.01 |
| CDX99780 | Canola | nucleus | 54.55 | 60.34 |
| CDY71548 | Canola | nucleus | 51.52 | 60.0 |
| CDY48072 | Canola | nucleus | 51.52 | 60.0 |
| CDY04169 | Canola | nucleus | 49.49 | 55.68 |
| CDY33124 | Canola | nucleus | 49.49 | 55.68 |
| CDX85297 | Canola | nucleus | 38.89 | 44.77 |
| CDY35775 | Canola | nucleus | 37.88 | 43.86 |
| CDY66911 | Canola | nucleus | 37.37 | 43.02 |
| CDX81569 | Canola | nucleus | 24.24 | 40.0 |
| CDY45843 | Canola | nucleus | 24.24 | 40.0 |
| PGSC0003DMT400019465 | Potato | nucleus | 38.89 | 39.69 |
| Solyc04g005170.1.1 | Tomato | nucleus | 37.37 | 38.74 |
| VIT_01s0010g00930.t01 | Wine grape | nucleus | 37.88 | 38.46 |
| KRH75199 | Soybean | nucleus | 37.88 | 37.88 |
| PGSC0003DMT400004821 | Potato | nucleus | 36.87 | 37.63 |
| CDX69495 | Canola | nucleus | 33.84 | 36.61 |
| CDX70656 | Canola | nucleus | 34.85 | 36.32 |
| KRH71054 | Soybean | nucleus | 36.36 | 36.18 |
| CDX85530 | Canola | nucleus | 34.34 | 36.17 |
| Zm00001d052807_P001 | Maize | nucleus | 25.76 | 36.17 |
| CDX78655 | Canola | nucleus | 34.34 | 35.23 |
| CDY26467 | Canola | nucleus | 32.32 | 34.97 |
| CDX90970 | Canola | nucleus | 33.84 | 34.54 |
| CDX70639 | Canola | nucleus | 33.33 | 34.38 |
| GSMUA_Achr5P05350_001 | Banana | nucleus | 25.76 | 31.1 |
| GSMUA_Achr9P14690_001 | Banana | nucleus | 24.24 | 30.77 |
| Os02t0191600-00 | Rice | nucleus | 29.8 | 29.65 |
| Zm00001d015664_P001 | Maize | nucleus | 24.75 | 29.17 |
| GSMUA_Achr6P36230_001 | Banana | nucleus | 24.75 | 28.0 |
| GSMUA_Achr8P23510_001 | Banana | nucleus | 22.22 | 27.33 |
| TraesCS6D01G160200.1 | Wheat | nucleus | 24.24 | 27.27 |
| Os09t0474000-01 | Rice | nucleus | 23.74 | 27.17 |
| TraesCS7B01G293900.1 | Wheat | nucleus | 22.73 | 26.95 |
| Zm00001d005962_P001 | Maize | nucleus, plastid | 22.22 | 26.83 |
| EES07324 | Sorghum | nucleus | 22.73 | 26.63 |
| Os02t0728001-00 | Rice | nucleus | 22.73 | 26.63 |
| TraesCS6B01G198700.1 | Wheat | nucleus | 23.74 | 26.55 |
| EES06428 | Sorghum | nucleus | 23.74 | 26.55 |
| Zm00001d017911_P001 | Maize | nucleus | 23.23 | 26.14 |
| TraesCS6A01G170600.1 | Wheat | nucleus | 23.23 | 25.99 |
| HORVU1Hr1G013620.1 | Barley | nucleus | 23.23 | 25.27 |
| EER96905 | Sorghum | nucleus | 23.74 | 25.27 |
| TraesCS7B01G293700.1 | Wheat | nucleus | 21.21 | 25.15 |
| HORVU5Hr1G070540.1 | Barley | nucleus | 24.24 | 25.0 |
| TraesCS5A01G250400.1 | Wheat | nucleus | 24.75 | 25.0 |
| CDY51629 | Canola | nucleus | 23.74 | 24.87 |
| Zm00001d051739_P001 | Maize | nucleus | 18.69 | 24.67 |
| Zm00001d020823_P001 | Maize | nucleus | 24.24 | 24.62 |
| TraesCS7D01G213200.1 | Wheat | nucleus | 22.73 | 24.46 |
| CDY66792 | Canola | nucleus | 20.2 | 24.39 |
| TraesCS6D01G270000.1 | Wheat | nucleus | 24.24 | 24.12 |
| CDY02193 | Canola | nucleus | 22.22 | 24.04 |
| HORVU6Hr1G072490.1 | Barley | nucleus | 23.74 | 23.98 |
| TraesCS7B01G118500.1 | Wheat | nucleus | 22.22 | 23.91 |
| Zm00001d053703_P001 | Maize | nucleus | 21.21 | 23.86 |
| Zm00001d031272_P001 | Maize | nucleus | 24.24 | 23.76 |
| CDY40812 | Canola | nucleus | 21.21 | 23.73 |
| CDY42835 | Canola | nucleus | 21.21 | 23.73 |
| HORVU2Hr1G098530.1 | Barley | nucleus | 21.21 | 23.73 |
| TraesCS7A01G181100.1 | Wheat | nucleus | 25.76 | 23.5 |
| TraesCS5B01G248400.1 | Wheat | nucleus | 22.73 | 23.32 |
| TraesCS6A01G288900.1 | Wheat | nucleus | 24.24 | 23.3 |
| TraesCS7A01G211500.1 | Wheat | nucleus | 21.72 | 23.24 |
| HORVU7Hr1G043080.1 | Barley | nucleus | 22.73 | 23.2 |
| TraesCS7D01G182900.1 | Wheat | nucleus | 25.76 | 23.08 |
| Zm00001d046664_P001 | Maize | nucleus | 21.72 | 22.99 |
| CDX70638 | Canola | nucleus | 18.69 | 22.84 |
| CDX78324 | Canola | nucleus | 19.19 | 22.35 |
| KXG19789 | Sorghum | nucleus | 21.21 | 22.34 |
| TraesCS6B01G318700.1 | Wheat | nucleus | 23.23 | 22.22 |
| CDX87188 | Canola | nucleus | 24.24 | 22.02 |
| CDX70640 | Canola | nucleus | 17.68 | 22.01 |
| TraesCS5D01G258000.1 | Wheat | nucleus | 21.21 | 21.76 |
| HORVU6Hr1G034810.1 | Barley | nucleus | 23.23 | 21.5 |
| KXG25724 | Sorghum | nucleus | 24.75 | 21.21 |
| Os08t0487100-01 | Rice | nucleus | 24.24 | 20.87 |
| KXG20422 | Sorghum | nucleus | 20.71 | 20.71 |
| TraesCS7B01G086100.1 | Wheat | nucleus | 23.23 | 20.63 |
| HORVU7Hr1G037230.2 | Barley | nucleus | 22.73 | 20.27 |
| Zm00001d037360_P001 | Maize | nucleus | 20.2 | 20.2 |
| CDY16837 | Canola | nucleus | 21.72 | 19.46 |
| TraesCS7A01G391800.1 | Wheat | mitochondrion | 22.73 | 18.59 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078I5Z1 | UniProt:A0A078I5Z1 | EnsemblPlants:CDY45336 | ProteinID:CDY45336 |
| ProteinID:CDY45336.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00081807001 | InterPro:IPR004827 | PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF133 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0004EF3CB9 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g30400DBnaC01g30400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5Z1]
Coordinates
chrLK032621:-:42653..43249
Molecular Weight (calculated)
23045.6 Da
IEP (calculated)
5.721
GRAVY (calculated)
-1.082
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTIPAELTG YFQYVSPEIY NNQTPITESE YFKMPSSPTS ASSFYYINGL VTKNNNNYSS SSNVQDPMTS NNSTSDDDHQ QSMVIDERKQ RRMISNRESA
101: RRSRMRKQRH LDELWSQVIR LRTDNHCLID KLNRVSESHQ LALKENAKLK EETSNLKQLI SEIKSNNEDD NNFLRELEDS ISNSRSDSNQ MGRDFELC
101: RRSRMRKQRH LDELWSQVIR LRTDNHCLID KLNRVSESHQ LALKENAKLK EETSNLKQLI SEIKSNNEDD NNFLRELEDS ISNSRSDSNQ MGRDFELC
001: MNTIPAELTG YFHYLPPDKY NNQTPIMESE YFNMPSSPTS CSSFYHLNGL INNNNYSSSS NGQDLMTSNN STSDEDHQQS MVIDERKQRR MISNRESARR
101: SRMRKQRHLD ELWSQVIRLR TDNHCLMDKL NRVSESHELA LKENAKLKEE TSDLRQLISE IKSHNEDDNS FLRELEDSIS NSRSDSNQSG RDFELC
101: SRMRKQRHLD ELWSQVIRLR TDNHCLMDKL NRVSESHELA LKENAKLKEE TSDLRQLISE IKSHNEDDNS FLRELEDSIS NSRSDSNQSG RDFELC
Arabidopsis Description
AtbZIP58BZIP58 [Source:UniProtKB/TrEMBL;Acc:A0A178WP44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.