Factsheet for VIT_01s0010g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00930.t01
VIT_07s0005g01450.t01
VIT_14s0083g00700.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13600.1	VIT_01s0010g00930.t01	AT1G13600.1	16709202
AT1G13600.1	VIT_01s0010g00930.t01	AT2G04038.1	16709202
AT1G13600.1	VIT_14s0083g00700.t01	AT3G30530.1	16709202
AT1G13600.1	VIT_07s0005g01450.t01	AT3G62420.1	16709202
AT2G04038.1	VIT_01s0010g00930.t01	AT1G13600.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0083g00700.t01	Wine grape	nucleus	64.62	63.64
Bra026523.1-P	Field mustard	nucleus	28.21	61.8
PGSC0003DMT400019465	Potato	nucleus	57.44	57.73
KRH75199	Soybean	nucleus	55.38	54.55
KRH71054	Soybean	nucleus	54.36	53.27
AT2G04038.1	Thale cress	nucleus	40.51	47.59
Bra025144.1-P	Field mustard	nucleus	40.51	46.47
CDY48072	Canola	nucleus	40.51	46.47
CDY71548	Canola	nucleus	40.51	46.47
PGSC0003DMT400004821	Potato	nucleus	45.64	45.88
Solyc04g005170.1.1	Tomato	nucleus	44.62	45.55
CDX99780	Canola	nucleus	41.03	44.69
CDY04169	Canola	nucleus	39.49	43.75
CDY33124	Canola	nucleus	39.49	43.75
CDY46496	Canola	nucleus	39.49	43.02
GSMUA_Achr9P14690_001	Banana	nucleus	34.36	42.95
Bra017359.1-P	Field mustard	nucleus	37.44	41.95
CDY16099	Canola	nucleus	34.87	41.72
GSMUA_Achr8P23510_001	Banana	nucleus	33.33	40.37
AT1G13600.1	Thale cress	nucleus	40.51	40.31
Bra026895.1-P	Field mustard	nucleus	39.49	39.49
Bra026896.1-P	Field mustard	nucleus	39.49	39.49
Bra019715.1-P	Field mustard	nucleus	38.46	38.86
Os02t0728001-00	Rice	nucleus	33.33	38.46
GSMUA_Achr6P36230_001	Banana	nucleus	34.36	38.29
CDY45336	Canola	nucleus	38.46	37.88
CDY37559	Canola	nucleus	38.46	37.88
CDX98108	Canola	nucleus	38.46	37.88
EES07324	Sorghum	nucleus	32.31	37.28
GSMUA_Achr5P05350_001	Banana	nucleus	31.28	37.2
Zm00001d052807_P001	Maize	nucleus	26.15	36.17
Zm00001d017911_P001	Maize	nucleus	31.28	34.66
EER96905	Sorghum	nucleus	30.26	31.72
TraesCS6A01G170600.1	Wheat	nucleus	28.72	31.64
Zm00001d051739_P001	Maize	nucleus	24.1	31.33
TraesCS6D01G160200.1	Wheat	nucleus	28.21	31.25
Os09t0474000-01	Rice	nucleus	27.18	30.64
HORVU2Hr1G098530.1	Barley	nucleus	27.18	29.94
TraesCS7B01G293700.1	Wheat	nucleus	25.64	29.94
TraesCS7B01G118500.1	Wheat	nucleus	28.21	29.89
Zm00001d005962_P001	Maize	nucleus, plastid	25.13	29.88
Zm00001d015664_P001	Maize	nucleus	25.64	29.76
TraesCS6B01G198700.1	Wheat	nucleus	26.67	29.38
TraesCS7D01G213200.1	Wheat	nucleus	27.69	29.35
HORVU6Hr1G072490.1	Barley	nucleus	29.23	29.08
EES06428	Sorghum	nucleus	26.15	28.81
TraesCS7A01G211500.1	Wheat	nucleus	27.18	28.65
TraesCS6D01G270000.1	Wheat	nucleus	29.23	28.64
TraesCS6B01G318700.1	Wheat	nucleus	30.26	28.5
TraesCS5B01G248400.1	Wheat	nucleus	28.21	28.5
TraesCS7B01G293900.1	Wheat	nucleus	24.1	28.14
HORVU5Hr1G070540.1	Barley	nucleus	27.69	28.12
HORVU7Hr1G043080.1	Barley	nucleus	27.69	27.84
Os02t0191600-00	Rice	nucleus	28.21	27.64
TraesCS5A01G250400.1	Wheat	nucleus	27.69	27.55
Zm00001d020823_P001	Maize	nucleus	27.18	27.18
TraesCS5D01G258000.1	Wheat	nucleus	26.67	26.94
HORVU1Hr1G013620.1	Barley	nucleus	25.13	26.92
Zm00001d031272_P001	Maize	nucleus	27.18	26.24
KXG19789	Sorghum	nucleus	25.13	26.06
TraesCS7A01G181100.1	Wheat	nucleus	28.72	25.81
TraesCS6A01G288900.1	Wheat	nucleus	27.18	25.73
TraesCS7D01G182900.1	Wheat	nucleus	28.72	25.34
HORVU6Hr1G034810.1	Barley	nucleus	27.69	25.23
Zm00001d053703_P001	Maize	nucleus	22.56	25.0
Zm00001d046664_P001	Maize	nucleus	23.59	24.6
Zm00001d037360_P001	Maize	nucleus	24.62	24.24
KXG20422	Sorghum	nucleus	24.1	23.74
HORVU7Hr1G037230.2	Barley	nucleus	26.15	22.97
Os08t0487100-01	Rice	nucleus	26.67	22.61
KXG25724	Sorghum	nucleus	26.67	22.51
TraesCS7B01G086100.1	Wheat	nucleus	25.64	22.42
TraesCS7A01G391800.1	Wheat	mitochondrion	20.51	16.53

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100258132	wikigene:100258132	MapMan:15.5.4.1	EMBL:AM457581	ProteinID:CAN76820
ProteinID:CAN76820.1	ProteinID:CBI27427	ProteinID:CBI27427.3	ncoils:Coil	UniProt:D7TAA5	EMBL:FN595754
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
EntrezGene:LOC100258132	wikigene:LOC100258132	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF133	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0001982B90	ArrayExpress:VIT_01s0010g00930	EnsemblPlantsGene:VIT_01s0010g00930
EnsemblPlants:VIT_01s0010g00930.t01	RefSeq:XP_002269495	RefSeq:XP_002269495.1	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:16444033..16444682

Molecular Weight (calculated)

22355.2 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.777

Length

195 amino acids

Sequence
(BLAST)

001: MLPGEFTGIH YMAPENPTPF PANFGMTYDN TPTLHFGGYL SNLTTSQIPP IHEFTPQSSS LSNNSTSDEA EEHQLSIIDE RKQRRMISNR ESARRSRMRK
101: QKHLDELWSQ VVRLRNENHS LIDKLNHVSE CHDRVLQENV RLKEEASDLR QMLTDLRIGS PYTTLRELEG VSCNTAHLRA ESSNQSITSS IDLLH

Best Arabidopsis Sequence Match ( AT3G30530.1 )
(BLAST)

001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE

Arabidopsis Description

ATBZIP42BZIP42 [Source:UniProtKB/TrEMBL;Acc:A0A178VMH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.