Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra019715.1-P | |
| Bra026895.1-P | |
| Bra026896.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04038.1 | Bra019715.1-P | AT1G13600.1 | 16709202 |
| AT2G04038.1 | Bra026895.1-P | AT1G13600.1 | 16709202 |
| AT2G04038.1 | Bra026896.1-P | AT1G13600.1 | 16709202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48072 | Canola | nucleus | 100.0 | 100.0 |
| Bra017359.1-P | Field mustard | nucleus | 80.59 | 78.74 |
| Bra026523.1-P | Field mustard | nucleus | 38.82 | 74.16 |
| AT2G04038.1 | Thale cress | nucleus | 66.47 | 68.07 |
| Bra026895.1-P | Field mustard | nucleus | 61.18 | 53.33 |
| Bra026896.1-P | Field mustard | nucleus | 61.18 | 53.33 |
| Bra019715.1-P | Field mustard | nucleus | 59.41 | 52.33 |
| Bra020735.1-P | Field mustard | nucleus | 41.18 | 40.94 |
| Bra038341.1-P | Field mustard | nucleus | 28.82 | 40.83 |
| VIT_01s0010g00930.t01 | Wine grape | nucleus | 46.47 | 40.51 |
| PGSC0003DMT400019465 | Potato | nucleus | 45.88 | 40.21 |
| Bra025418.1-P | Field mustard | nucleus | 40.0 | 39.53 |
| Solyc04g005170.1.1 | Tomato | nucleus | 42.35 | 37.7 |
| KRH71054 | Soybean | nucleus | 43.53 | 37.19 |
| PGSC0003DMT400004821 | Potato | nucleus | 40.59 | 35.57 |
| Bra006324.1-P | Field mustard | nucleus | 37.65 | 35.36 |
| KRH75199 | Soybean | nucleus | 41.18 | 35.35 |
| GSMUA_Achr9P14690_001 | Banana | nucleus | 31.76 | 34.62 |
| Zm00001d052807_P001 | Maize | nucleus | 27.65 | 33.33 |
| Bra023540.1-P | Field mustard | nucleus | 36.47 | 32.98 |
| GSMUA_Achr8P23510_001 | Banana | nucleus | 31.18 | 32.92 |
| Bra029353.1-P | Field mustard | mitochondrion, nucleus | 20.0 | 32.69 |
| Bra008670.1-P | Field mustard | nucleus | 34.12 | 31.69 |
| EES07324 | Sorghum | nucleus | 31.18 | 31.36 |
| Zm00001d015664_P001 | Maize | nucleus | 30.0 | 30.36 |
| Os02t0728001-00 | Rice | nucleus | 30.0 | 30.18 |
| GSMUA_Achr5P05350_001 | Banana | nucleus | 27.65 | 28.66 |
| TraesCS6D01G160200.1 | Wheat | nucleus | 29.41 | 28.41 |
| TraesCS6A01G170600.1 | Wheat | nucleus | 29.41 | 28.25 |
| Zm00001d005962_P001 | Maize | nucleus, plastid | 27.06 | 28.05 |
| GSMUA_Achr6P36230_001 | Banana | nucleus | 28.82 | 28.0 |
| Zm00001d017911_P001 | Maize | nucleus | 28.82 | 27.84 |
| TraesCS6B01G198700.1 | Wheat | nucleus | 28.82 | 27.68 |
| TraesCS6D01G270000.1 | Wheat | nucleus | 32.35 | 27.64 |
| Zm00001d051739_P001 | Maize | nucleus | 24.12 | 27.33 |
| Os09t0474000-01 | Rice | nucleus | 27.65 | 27.17 |
| Os02t0191600-00 | Rice | nucleus | 31.76 | 27.14 |
| Bra013005.1-P | Field mustard | nucleus | 28.82 | 26.92 |
| TraesCS7B01G118500.1 | Wheat | nucleus | 28.82 | 26.63 |
| TraesCS7D01G213200.1 | Wheat | nucleus | 28.82 | 26.63 |
| HORVU2Hr1G098530.1 | Barley | nucleus | 27.65 | 26.55 |
| HORVU6Hr1G072490.1 | Barley | nucleus | 30.59 | 26.53 |
| TraesCS7A01G211500.1 | Wheat | nucleus | 28.82 | 26.49 |
| TraesCS6A01G288900.1 | Wheat | nucleus | 31.18 | 25.73 |
| TraesCS6B01G318700.1 | Wheat | nucleus | 31.18 | 25.6 |
| HORVU1Hr1G013620.1 | Barley | nucleus | 27.06 | 25.27 |
| TraesCS7B01G293900.1 | Wheat | nucleus | 24.71 | 25.15 |
| Bra005971.1-P | Field mustard | nucleus | 23.53 | 25.0 |
| TraesCS5A01G250400.1 | Wheat | nucleus | 28.82 | 25.0 |
| HORVU5Hr1G070540.1 | Barley | nucleus | 28.24 | 25.0 |
| KXG19789 | Sorghum | nucleus | 27.65 | 25.0 |
| EES06428 | Sorghum | nucleus | 25.88 | 24.86 |
| HORVU7Hr1G043080.1 | Barley | nucleus | 28.24 | 24.74 |
| TraesCS5B01G248400.1 | Wheat | nucleus | 27.65 | 24.35 |
| Zm00001d020823_P001 | Maize | nucleus | 27.65 | 24.1 |
| Bra035957.1-P | Field mustard | nucleus | 25.88 | 23.91 |
| EER96905 | Sorghum | nucleus | 25.88 | 23.66 |
| TraesCS7B01G293700.1 | Wheat | nucleus | 22.94 | 23.35 |
| Zm00001d031272_P001 | Maize | nucleus | 27.65 | 23.27 |
| Zm00001d037360_P001 | Maize | nucleus | 27.06 | 23.23 |
| TraesCS7A01G181100.1 | Wheat | nucleus | 29.41 | 23.04 |
| TraesCS5D01G258000.1 | Wheat | nucleus | 25.88 | 22.8 |
| Zm00001d053703_P001 | Maize | nucleus | 23.53 | 22.73 |
| TraesCS7D01G182900.1 | Wheat | nucleus | 28.82 | 22.17 |
| HORVU7Hr1G037230.2 | Barley | nucleus | 28.82 | 22.07 |
| Os08t0487100-01 | Rice | nucleus | 29.41 | 21.74 |
| TraesCS7B01G086100.1 | Wheat | nucleus | 28.24 | 21.52 |
| HORVU6Hr1G034810.1 | Barley | nucleus | 27.06 | 21.5 |
| KXG25724 | Sorghum | nucleus | 28.82 | 21.21 |
| Zm00001d046664_P001 | Maize | nucleus | 22.94 | 20.86 |
| KXG20422 | Sorghum | nucleus | 23.53 | 20.2 |
| TraesCS7A01G391800.1 | Wheat | mitochondrion | 24.71 | 17.36 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EnsemblPlantsGene:Bra025144 | EnsemblPlants:Bra025144.1 | EnsemblPlants:Bra025144.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 | UniProt:M4E8N8 | PFAM:PF00170 | ScanProsite:PS00036 |
| PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF133 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI000253F78E |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
AT2G04038 (E=2e-047) AtbZIP48 | AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48); DNA binding / transcription factor
Coordinates
chrA06:-:23242477..23242989
Molecular Weight (calculated)
19844.2 Da
IEP (calculated)
6.946
GRAVY (calculated)
-0.892
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPAEITGYF QYLSPEDLTM IPAEFNVINM PSSPTSSSSL NYLNDLINNN NYSSSSNGQD LMLSNNSTSD EDYHHNHRQS IIILDERKQR RMLSNRESAR
101: RSRMRKQRHL DELWSQVIRL RNDNNCLIDK LNSVLETQDN VLKENSKLKE EASDLRRLVC DLKSNKYNSF
101: RSRMRKQRHL DELWSQVIRL RNDNNCLIDK LNSVLETQDN VLKENSKLKE EASDLRRLVC DLKSNKYNSF
001: MIPAEINGYF QYLSPEYNVI NMPSSPTSSL NYLNDLIINN NNYSSSSNSQ DLMISNNSTS DEDHHQSIMV LDERKQRRML SNRESARRSR MRKQRHLDEL
101: WSQVIRLRNE NNCLIDKLNR VSETQNCVLK ENSKLKEEAS DLRQLVCELK SNKNNNNSFP REFEDN
101: WSQVIRLRNE NNCLIDKLNR VSETQNCVLK ENSKLKEEAS DLRQLVCELK SNKNNNNSFP REFEDN
Arabidopsis Description
AtbZIP48BZIP48 [Source:UniProtKB/TrEMBL;Acc:A0A178VS52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.