Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G160200.1 | Wheat | nucleus | 80.79 | 81.25 |
| TraesCS6B01G198700.1 | Wheat | nucleus | 74.01 | 74.01 |
| HORVU6Hr1G034810.1 | Barley | nucleus | 61.02 | 50.47 |
| Bra026523.1-P | Field mustard | nucleus | 20.34 | 40.45 |
| Zm00001d053703_P001 | Maize | nucleus | 37.85 | 38.07 |
| Bra038341.1-P | Field mustard | nucleus | 22.6 | 33.33 |
| CDY45843 | Canola | nucleus | 22.6 | 33.33 |
| CDX81569 | Canola | nucleus | 21.47 | 31.67 |
| TraesCS5A01G250400.1 | Wheat | nucleus | 33.33 | 30.1 |
| CDY16099 | Canola | nucleus | 27.12 | 29.45 |
| CDY71548 | Canola | nucleus | 28.25 | 29.41 |
| Bra025144.1-P | Field mustard | nucleus | 28.25 | 29.41 |
| CDY48072 | Canola | nucleus | 28.25 | 29.41 |
| VIT_01s0010g00930.t01 | Wine grape | nucleus | 31.64 | 28.72 |
| Bra025418.1-P | Field mustard | nucleus | 27.68 | 28.49 |
| AT5G38800.1 | Thale cress | nucleus | 26.55 | 28.48 |
| AT2G04038.1 | Thale cress | nucleus | 26.55 | 28.31 |
| CDX85297 | Canola | nucleus | 27.12 | 27.91 |
| CDY66911 | Canola | nucleus | 27.12 | 27.91 |
| Bra017359.1-P | Field mustard | nucleus | 27.12 | 27.59 |
| Solyc04g005170.1.1 | Tomato | nucleus | 29.38 | 27.23 |
| KRH71054 | Soybean | nucleus | 30.51 | 27.14 |
| CDY33124 | Canola | nucleus | 26.55 | 26.7 |
| CDY04169 | Canola | nucleus | 26.55 | 26.7 |
| AT3G30530.1 | Thale cress | nucleus | 25.99 | 26.59 |
| CDY35775 | Canola | nucleus | 25.42 | 26.32 |
| PGSC0003DMT400019465 | Potato | nucleus | 28.81 | 26.29 |
| AT1G68880.1 | Thale cress | nucleus | 20.34 | 26.09 |
| Solyc03g046440.1.1 | Tomato | nucleus | 25.42 | 26.01 |
| TraesCS7A01G181100.1 | Wheat | nucleus | 31.64 | 25.81 |
| AT5G15830.1 | Thale cress | nucleus | 27.12 | 25.81 |
| KRH75199 | Soybean | nucleus | 28.81 | 25.76 |
| Bra020735.1-P | Field mustard | nucleus | 24.86 | 25.73 |
| PGSC0003DMT400003516 | Potato | nucleus | 25.99 | 25.56 |
| Bra023540.1-P | Field mustard | nucleus | 27.12 | 25.53 |
| CDX85530 | Canola | nucleus | 27.12 | 25.53 |
| Bra006324.1-P | Field mustard | nucleus | 25.99 | 25.41 |
| TraesCS7A01G211500.1 | Wheat | nucleus | 26.55 | 25.41 |
| KRH45160 | Soybean | nucleus | 27.68 | 25.39 |
| PGSC0003DMT400004821 | Potato | nucleus | 27.68 | 25.26 |
| VIT_14s0083g00700.t01 | Wine grape | nucleus | 28.25 | 25.25 |
| TraesCS7A01G391800.1 | Wheat | mitochondrion | 34.46 | 25.21 |
| CDX99780 | Canola | nucleus | 25.42 | 25.14 |
| CDY26467 | Canola | nucleus | 25.99 | 25.14 |
| Solyc02g089420.1.1 | Tomato | nucleus | 25.42 | 25.0 |
| AT1G13600.1 | Thale cress | nucleus | 27.68 | 25.0 |
| CDX90970 | Canola | nucleus | 27.12 | 24.74 |
| Bra026896.1-P | Field mustard | nucleus | 27.12 | 24.62 |
| Bra026895.1-P | Field mustard | nucleus | 27.12 | 24.62 |
| KRH01443 | Soybean | nucleus | 27.12 | 24.62 |
| Bra008670.1-P | Field mustard | nucleus | 25.42 | 24.59 |
| CDX69495 | Canola | nucleus | 25.42 | 24.59 |
| CDY46496 | Canola | nucleus | 24.86 | 24.58 |
| CDX70639 | Canola | nucleus | 26.55 | 24.48 |
| TraesCS6A01G288900.1 | Wheat | nucleus | 28.25 | 24.27 |
| CDX78655 | Canola | nucleus | 25.99 | 23.83 |
| Bra019715.1-P | Field mustard | nucleus | 25.99 | 23.83 |
| CDX70656 | Canola | nucleus | 25.42 | 23.68 |
| CDY37559 | Canola | nucleus | 25.99 | 23.23 |
| CDX98108 | Canola | nucleus | 25.99 | 23.23 |
| CDY45336 | Canola | nucleus | 25.99 | 23.23 |
| Bra029353.1-P | Field mustard | mitochondrion, nucleus | 13.56 | 23.08 |
| KRH18312 | Soybean | nucleus | 25.99 | 21.5 |
| AT5G08141.1 | Thale cress | nucleus | 16.38 | 21.17 |
| KRG93749 | Soybean | nucleus | 25.42 | 20.45 |
| CDY02193 | Canola | nucleus | 20.9 | 20.22 |
| Bra005971.1-P | Field mustard | nucleus | 17.51 | 19.38 |
| CDX78324 | Canola | nucleus | 18.08 | 18.82 |
| Bra013005.1-P | Field mustard | nucleus | 19.21 | 18.68 |
| CDY42835 | Canola | nucleus | 18.08 | 18.08 |
| CDY66792 | Canola | nucleus | 16.38 | 17.68 |
| CDY40812 | Canola | nucleus | 17.51 | 17.51 |
| Bra035957.1-P | Field mustard | nucleus | 18.08 | 17.39 |
| CDY51629 | Canola | nucleus | 18.08 | 16.93 |
| AT5G60830.1 | Thale cress | nucleus | 18.64 | 16.02 |
| CDX87188 | Canola | nucleus | 19.21 | 15.6 |
| CDY16837 | Canola | nucleus | 19.21 | 15.38 |
| KRH56749 | Soybean | nucleus | 18.08 | 14.95 |
| KRH03190 | Soybean | cytosol, mitochondrion | 8.47 | 14.42 |
| CDX70640 | Canola | nucleus | 12.43 | 13.84 |
| KRH63157 | Soybean | nucleus | 12.99 | 13.77 |
| CDX70638 | Canola | nucleus | 12.43 | 13.58 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G170600.1 | EnsemblPlantsGene:TraesCS6A01G170600 | Gene3D:1.20.5.170 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:bZIP | ncoils:Coil | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF138 | PFAM:PF00170 | PFscan:PS50217 |
| ScanProsite:PS00036 | SEG:seg | SMART:SM00338 | SUPFAM:SSF57959 | MapMan:15.5.4.1 | : |
Description
No Description!
Coordinates
chr6A:+:181013045..181013942
Molecular Weight (calculated)
19140.2 Da
IEP (calculated)
8.898
GRAVY (calculated)
-0.799
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRHGAACSI ACHPGGAGVF MLPQVYDPRA THGQYDLASL SDMVAPYTGC NGGSSAVGWA PPGGDSVDDD GRASRRGNGD ERKTRRLASN RESARRSRVR
101: KQRRLDELST RAARLRAANQ RLLVELNRVL AEHGRVARES ARLREEASDL RARLDGMGVD EADDVAPQST EDTGNTA
101: KQRRLDELST RAARLRAANQ RLLVELNRVL AEHGRVARES ARLREEASDL RARLDGMGVD EADDVAPQST EDTGNTA
001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE
Arabidopsis Description
ATBZIP42BZIP42 [Source:UniProtKB/TrEMBL;Acc:A0A178VMH2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.