Factsheet for Solyc04g005170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079480.2.1
Solyc02g089420.1.1
Solyc03g046440.1.1
Solyc04g005170.1.1
Solyc04g080740.1.1
Solyc06g009640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13600.1	Solyc04g005170.1.1	AT1G13600.1	16709202
AT1G13600.1	Solyc04g005170.1.1	AT2G04038.1	16709202
AT1G13600.1	Solyc02g089420.1.1	AT3G30530.1	16709202
AT1G13600.1	Solyc03g046440.1.1	AT3G30530.1	16709202
AT1G13600.1	Solyc01g079480.2.1	AT3G62420.1	16709202
AT1G13600.1	Solyc06g009640.1.1	AT3G62420.1	16709202
AT1G13600.1	Solyc04g080740.1.1	AT4G34590.1	16709202
AT2G04038.1	Solyc04g005170.1.1	AT1G13600.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004821	Potato	nucleus	70.68	69.59
Bra026523.1-P	Field mustard	nucleus	25.65	55.06
CDY16099	Canola	nucleus	39.27	46.01
KRH75199	Soybean	nucleus	47.12	45.45
KRH71054	Soybean	nucleus	47.12	45.23
VIT_01s0010g00930.t01	Wine grape	nucleus	45.55	44.62
AT2G04038.1	Thale cress	nucleus	38.74	44.58
CDY71548	Canola	nucleus	38.74	43.53
CDY48072	Canola	nucleus	37.7	42.35
Bra025144.1-P	Field mustard	nucleus	37.7	42.35
Solyc02g089420.1.1	Tomato	nucleus	38.22	40.56
Bra017359.1-P	Field mustard	nucleus	36.13	39.66
AT1G13600.1	Thale cress	nucleus	40.31	39.29
CDY04169	Canola	nucleus	36.13	39.2
CDY33124	Canola	nucleus	36.13	39.2
Bra026896.1-P	Field mustard	nucleus	39.79	38.97
Bra026895.1-P	Field mustard	nucleus	39.79	38.97
CDY46496	Canola	nucleus	36.13	38.55
Bra019715.1-P	Field mustard	nucleus	38.74	38.34
CDX99780	Canola	nucleus	35.6	37.99
CDX98108	Canola	nucleus	38.74	37.37
CDY45336	Canola	nucleus	38.74	37.37
CDY37559	Canola	nucleus	38.74	37.37
Solyc03g046440.1.1	Tomato	nucleus	33.51	36.99
GSMUA_Achr9P14690_001	Banana	nucleus	29.84	36.54
GSMUA_Achr6P36230_001	Banana	nucleus	32.98	36.0
GSMUA_Achr8P23510_001	Banana	nucleus	29.84	35.4
Os02t0728001-00	Rice	nucleus	30.37	34.32
Zm00001d052807_P001	Maize	nucleus	23.56	31.91
EES07324	Sorghum	nucleus	27.75	31.36
GSMUA_Achr5P05350_001	Banana	nucleus	26.18	30.49
TraesCS6A01G170600.1	Wheat	nucleus	27.23	29.38
Zm00001d017911_P001	Maize	nucleus	26.7	28.98
Os09t0474000-01	Rice	nucleus	26.18	28.9
Zm00001d051739_P001	Maize	nucleus	22.51	28.67
Os02t0191600-00	Rice	nucleus	29.84	28.64
EES06428	Sorghum	nucleus	26.18	28.25
TraesCS6B01G198700.1	Wheat	nucleus	26.18	28.25
Zm00001d005962_P001	Maize	nucleus, plastid	24.08	28.05
TraesCS6D01G160200.1	Wheat	nucleus	25.65	27.84
EER96905	Sorghum	nucleus	26.7	27.42
Zm00001d015664_P001	Maize	nucleus	23.56	26.79
TraesCS7B01G293900.1	Wheat	nucleus	23.04	26.35
HORVU5Hr1G070540.1	Barley	nucleus	26.18	26.04
TraesCS7B01G293700.1	Wheat	nucleus	22.51	25.75
TraesCS6D01G270000.1	Wheat	nucleus	26.7	25.63
TraesCS7B01G118500.1	Wheat	nucleus	24.61	25.54
TraesCS7D01G213200.1	Wheat	nucleus	24.61	25.54
TraesCS5A01G250400.1	Wheat	nucleus	26.18	25.51
TraesCS7A01G211500.1	Wheat	nucleus	24.61	25.41
TraesCS7D01G182900.1	Wheat	nucleus	28.8	24.89
TraesCS5D01G258000.1	Wheat	nucleus	25.13	24.87
TraesCS5B01G248400.1	Wheat	nucleus	25.13	24.87
HORVU6Hr1G034810.1	Barley	nucleus	27.75	24.77
HORVU1Hr1G013620.1	Barley	nucleus	23.56	24.73
TraesCS6B01G318700.1	Wheat	nucleus	26.7	24.64
Zm00001d020823_P001	Maize	nucleus	25.13	24.62
HORVU6Hr1G072490.1	Barley	nucleus	25.13	24.49
TraesCS7A01G181100.1	Wheat	nucleus	27.75	24.42
Os08t0487100-01	Rice	nucleus	29.32	24.35
HORVU7Hr1G043080.1	Barley	nucleus	24.61	24.23
KXG25724	Sorghum	nucleus	28.8	23.81
HORVU2Hr1G098530.1	Barley	nucleus	21.99	23.73
Zm00001d046664_P001	Maize	nucleus	23.04	23.53
HORVU7Hr1G037230.2	Barley	nucleus	27.23	23.42
Zm00001d053703_P001	Maize	nucleus	21.47	23.3
TraesCS7B01G086100.1	Wheat	nucleus	26.7	22.87
Zm00001d031272_P001	Maize	nucleus	23.56	22.28
TraesCS6A01G288900.1	Wheat	nucleus	23.56	21.84
KXG20422	Sorghum	nucleus	22.51	21.72
KXG19789	Sorghum	nucleus	20.94	21.28
Zm00001d037360_P001	Maize	nucleus	21.47	20.71
TraesCS7A01G391800.1	Wheat	mitochondrion	20.94	16.53

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:K4BNC3	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF133	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc04g005170.1
EnsemblPlants:Solyc04g005170.1.1	UniParc:UPI0002765FD6	InterPro:bZIP	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:118047..118622

Molecular Weight (calculated)

22299.9 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.921

Length

191 amino acids

Sequence
(BLAST)

001: MISSEAATIH YLAQENPSSL PIDYTFTHKN FQFNNTFLTN NYQSFTFPIQ DLISTQPASC ISSNSTSDES EEQQHRIIDE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VVRLRTENNN LINKLNQVSE SHEKVVQENM QLKDEAYDLR RLLVDIQVAT PFNGFSNIDD NVPSSLKTES SNQSTTERKL E

Best Arabidopsis Sequence Match ( AT3G30530.1 )
(BLAST)

001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE

Arabidopsis Description

ATBZIP42BZIP42 [Source:UniProtKB/TrEMBL;Acc:A0A178VMH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.