Factsheet for Solyc01g079480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc01g079480.2.1
Solyc02g084860.1.1
Solyc03g033730.1.1
Solyc04g005170.1.1
Solyc04g080740.1.1
Solyc06g009640.1.1
Solyc08g006110.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62420.1	Solyc04g005170.1.1	AT1G13600.1	16709202
AT3G62420.1	Solyc02g084860.1.1	AT2G18160.1	16709202
AT3G62420.1	Solyc03g033730.1.1	AT2G18160.1	16709202
AT3G62420.1	Solyc02g084860.1.1	AT2G18160.1	16810321
AT3G62420.1	Solyc03g033730.1.1	AT2G18160.1	16810321
AT3G62420.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT3G62420.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT3G62420.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT3G62420.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT3G62420.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT3G62420.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT3G62420.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT3G62420.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT3G62420.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT3G62420.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT3G62420.1	Solyc01g079480.2.1	AT3G62420.1	16709202
AT3G62420.1	Solyc06g009640.1.1	AT3G62420.1	16709202
AT3G62420.1	Solyc04g080740.1.1	AT4G34590.1	16709202
AT3G62420.1	Solyc04g080740.1.1	AT4G34590.1	16810321
AT3G62420.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT3G62420.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT3G62420.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT3G62420.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT3G62420.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT3G62420.1	Solyc08g006110.2.1	AT5G24800.1	16709202
AT3G62420.1	Solyc08g006110.2.1	AT5G24800.1	16810321

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088166	Potato	nucleus	98.61	98.61
Solyc06g009640.1.1	Tomato	nucleus	76.39	76.39
GSMUA_Achr11P...	Banana	nucleus	54.17	54.17
Bra007679.1-P	Field mustard	nucleus	51.39	52.48
CDX76636	Canola	nucleus	51.39	52.48
CDY11421	Canola	nucleus	51.39	52.48
VIT_07s0005g01450.t01	Wine grape	nucleus	52.78	52.41
GSMUA_Achr8P22330_001	Banana	nucleus	52.08	52.08
AT3G62420.1	Thale cress	nucleus	52.78	52.05
CDY25111	Canola	nucleus	46.53	50.0
CDX67893	Canola	nucleus	46.53	50.0
Bra003500.1-P	Field mustard	nucleus	46.53	50.0
KRH68258	Soybean	nucleus	52.08	50.0
KRG96525	Soybean	nucleus	51.39	49.33
GSMUA_Achr11P...	Banana	nucleus	47.22	48.92
Solyc01g100460.2.1	Tomato	nucleus	46.53	48.55
GSMUA_Achr8P29960_001	Banana	nucleus	46.53	46.53
Solyc02g084860.1.1	Tomato	nucleus	45.83	45.83
KRH69221	Soybean	nucleus	44.44	42.95
KRH31798	Soybean	nucleus	45.14	42.76
Solyc04g080740.1.1	Tomato	nucleus	43.06	42.18
Solyc03g033730.1.1	Tomato	nucleus	33.33	41.74
Solyc01g109880.2.1	Tomato	nucleus	43.06	38.04
KRH65972	Soybean	nucleus	31.25	36.89
Os09t0306400-01	Rice	nucleus	37.5	35.29
Solyc10g054010.1.1	Tomato	nucleus	39.58	34.97
HORVU5Hr1G054510.1	Barley	nucleus	36.81	34.42
TraesCS5D01G183500.1	Wheat	nucleus	36.11	33.77
TraesCS5B01G176700.1	Wheat	nucleus	35.42	33.33
TraesCS5A01G179000.1	Wheat	nucleus	35.42	33.12
EER96530	Sorghum	nucleus	35.42	32.08
Zm00001d005578_P001	Maize	nucleus	34.72	29.41
Zm00001d030577_P001	Maize	nucleus	31.25	28.48
EES14897	Sorghum	nucleus, plastid	34.03	27.84
Os08t0357300-01	Rice	cytosol	15.97	20.35
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	13.19	15.7

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EMBL:AF176641	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF167	UniProt:Q9SPF7	SMART:SM00338	SUPFAM:SSF57959
EnsemblPlantsGene:Solyc01g079480.2	EnsemblPlants:Solyc01g079480.2.1	UniParc:UPI00000A3785	InterPro:bZIP	:	:

Description

BZIP DNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SPF7]

Coordinates

chr1:-:78518360..78519522

Molecular Weight (calculated)

16602.5 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.891

Length

144 amino acids

Sequence
(BLAST)

001: MASTQQPASS GSDGQRYATN DERKRKRMES NRESARRSRK RKQQHLEELM SQLTQLQNQS TIWREKIESV GRNFHTLDAE NNVLRAQMAE LTERLDSLNS
101: LTRFWADANG LAVDIPEIPD TLLEPWQLPC PIQPITASAD MFQF

Best Arabidopsis Sequence Match ( AT3G62420.1 )
(BLAST)

001: MGSLQMQTSP ESDNDPRYAT VTDERKRKRM ISNRESARRS RMRKQKQLGD LINEVTLLKN DNAKITEQVD EASKKYIEME SKNNVLRAQA SELTDRLRSL
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC

Arabidopsis Description

BZIP53bZIP transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.