Factsheet for Solyc08g006110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc01g079480.2.1
Solyc02g084860.1.1
Solyc03g033730.1.1
Solyc04g080740.1.1
Solyc06g009640.1.1
Solyc08g006110.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24800.1	Solyc02g084860.1.1	AT2G18160.1	16709202
AT5G24800.1	Solyc03g033730.1.1	AT2G18160.1	16709202
AT5G24800.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT5G24800.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT5G24800.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT5G24800.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT5G24800.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT5G24800.1	Solyc01g079480.2.1	AT3G62420.1	16709202
AT5G24800.1	Solyc06g009640.1.1	AT3G62420.1	16709202
AT5G24800.1	Solyc01g079480.2.1	AT3G62420.1	16810321
AT5G24800.1	Solyc06g009640.1.1	AT3G62420.1	16810321
AT5G24800.1	Solyc04g080740.1.1	AT4G34590.1	16709202
AT5G24800.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT5G24800.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT5G24800.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT5G24800.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT5G24800.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT5G24800.1	Solyc08g006110.2.1	AT5G24800.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038493	Potato	nucleus	69.8	70.2
Solyc08g022080.2.1	Tomato	mitochondrion, nucleus	14.81	36.88
Os02t0175100-01	Rice	mitochondrion, nucleus	28.49	36.1
KRH04810	Soybean	nucleus	32.76	36.05
Os02t0266800-01	Rice	nucleus	29.63	34.9
AT5G24800.1	Thale cress	nucleus	27.35	34.66
GSMUA_Achr1P23640_001	Banana	nucleus	24.5	34.26
CDY05458	Canola	nucleus	27.07	34.17
CDY05397	Canola	nucleus	27.07	34.17
Zm00001d015421_P001	Maize	nucleus	31.91	33.84
CDX80469	Canola	nucleus	26.78	33.81
VIT_04s0008g02750.t01	Wine grape	nucleus	33.62	33.81
TraesCS7B01G391800.1	Wheat	nucleus	23.65	33.47
CDX88132	Canola	nucleus	26.5	33.45
KRH16196	Soybean	cytosol, nucleus	14.24	33.11
TraesCS7A01G488600.2	Wheat	nucleus	23.65	33.07
Bra020471.1-P	Field mustard	nucleus	27.07	32.87
TraesCS7D01G475100.1	Wheat	nucleus	23.08	32.79
Bra009793.1-P	Field mustard	nucleus	26.78	32.3
KXG29589	Sorghum	nucleus	29.34	32.19
Zm00001d046937_P001	Maize	nucleus	24.79	30.85
TraesCS6B01G182500.5	Wheat	nucleus	27.35	30.67
TraesCS6A01G154600.2	Wheat	nucleus	27.35	30.57
Os06t0662200-01	Rice	nucleus	25.64	30.51
Zm00001d003529_P001	Maize	cytosol	11.11	30.23
TraesCS6D01G144400.2	Wheat	nucleus	26.78	30.03
KRH52637	Soybean	nucleus	24.22	29.51
Zm00001d050588_P002	Maize	nucleus	17.95	27.75
EER90165	Sorghum	nucleus	22.51	27.53
KRH61976	Soybean	nucleus	23.08	27.0
GSMUA_Achr1P15640_001	Banana	nucleus	23.36	23.77
HORVU6Hr1G031330.2	Barley	nucleus	15.38	18.82
Solyc01g097330.2.1	Tomato	nucleus	23.93	18.5

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019725	GO:GO:0042803	GO:GO:0046982	GO:GO:0071333	InterPro:IPR004827	UniProt:K4CIA0
PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF113	SMART:SM00338
SUPFAM:SSF57959	EnsemblPlantsGene:Solyc08g006110.2	EnsemblPlants:Solyc08g006110.2.1	UniParc:UPI000276BE56	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chr8:-:849296..854274

Molecular Weight (calculated)

38860.1 Da

IEP (calculated)

5.805

GRAVY (calculated)

-0.710

Length

351 amino acids

Sequence
(BLAST)

001: MEKKMANFPS RDMKKSPSLL ALEEFVNHNK LFCGEDAKIG DVFGGNDHQQ NINNNNNINI NINHHDHDNN NSHHHPQLFD DICSIAPSFT MSNQDILSGL
101: SNCALTEKPL WSPNITPKQS SISVTGDSQS SICAGSPTPT IIMSKMRDNQ TMGANSGSYS DDDDVEGDVG PCEESADPLD IKRIRRQASN RESARRSRRR
201: KQAHLADLES QVDQFRGENE ALFKQLADAT QQYKESLTNN RVLKSNVEEL RAKVKLAEVR AARGTVSSSL SHLFLNYLTP PQSLDTNNNI TMRRLDNVSP
301: AINIIGEDSW GGISGQNPMI GVENVNAFDR NINNGAMSDN ASCISEVWSF K

Best Arabidopsis Sequence Match ( AT5G24800.1 )
(BLAST)

001: MDNHTAKDIG MKRSASELAL QEYLTTSPLD PCFDLMNRDY TCELRDSLLW SEGLFPAGPF RDAQSSICEN LSADSPVSAN KPEVRGGVRR TTSGSSHVNS
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP

Arabidopsis Description

BZIP9Basic leucine zipper 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.