Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G182500.5 | Wheat | nucleus | 95.86 | 96.17 |
| TraesCS6D01G144400.2 | Wheat | nucleus | 85.99 | 86.26 |
| Zm00001d015421_P001 | Maize | nucleus | 61.47 | 58.31 |
| Os02t0175100-01 | Rice | mitochondrion, nucleus | 48.73 | 55.23 |
| KXG29589 | Sorghum | nucleus | 53.82 | 52.81 |
| Os02t0266800-01 | Rice | nucleus | 46.82 | 49.33 |
| TraesCS7A01G488600.2 | Wheat | nucleus | 34.71 | 43.43 |
| GSMUA_Achr1P23640_001 | Banana | nucleus | 31.21 | 39.04 |
| HORVU6Hr1G031330.2 | Barley | nucleus | 32.48 | 35.54 |
| AT5G24800.1 | Thale cress | nucleus | 28.98 | 32.85 |
| CDX88132 | Canola | nucleus | 28.98 | 32.73 |
| CDY05397 | Canola | nucleus | 27.71 | 31.3 |
| Bra009793.1-P | Field mustard | nucleus | 28.98 | 31.27 |
| VIT_04s0008g02750.t01 | Wine grape | nucleus | 34.39 | 30.95 |
| CDY05458 | Canola | nucleus | 27.39 | 30.94 |
| CDX80469 | Canola | nucleus | 27.07 | 30.58 |
| KRH16196 | Soybean | cytosol, nucleus | 14.65 | 30.46 |
| Bra020471.1-P | Field mustard | nucleus | 27.39 | 29.76 |
| KRH04810 | Soybean | nucleus | 29.94 | 29.47 |
| PGSC0003DMT400038493 | Potato | nucleus | 31.85 | 28.65 |
| KRH52637 | Soybean | nucleus | 25.48 | 27.78 |
| KRH61976 | Soybean | nucleus | 26.43 | 27.67 |
| Solyc08g006110.2.1 | Tomato | nucleus | 30.57 | 27.35 |
| GSMUA_Achr1P15640_001 | Banana | nucleus | 29.3 | 26.67 |
| TraesCS5A01G057500.2 | Wheat | nucleus | 22.61 | 23.83 |
| TraesCS5A01G440400.1 | Wheat | nucleus | 25.48 | 20.41 |
| TraesCS1A01G329900.1 | Wheat | nucleus | 15.29 | 13.11 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF347 |
| SMART:SM00338 | SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS6A01G154600 | EnsemblPlants:TraesCS6A01G154600.2 | InterPro:bZIP | TIGR:cd14702 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:143376818..143378877
Molecular Weight (calculated)
33060.5 Da
IEP (calculated)
5.382
GRAVY (calculated)
-0.396
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKCASELEL EAFIRGRGLG AEQKPGTAAV GTANGPYGLF SAADLSGAFG FADAQTLNGT IQTHLWSQSP NLGARHPAVS TTIESQSSIY AAASPTSATN
101: LSIKESQAFG GTSGSDSDSE SMFDDGGLCD NGTNPTDVKR MRRMVSNRES ARRSRKRKQA HLVELETQVD QLRGDNASIF KQLTDANQQF TTAVTDNRIL
201: KSDVEALRVK VKLAEDMVAR GAMSCGLGHL GLSPAALNPC RVPDVLAGLD FLPGGPDDAC FGSLSPAEQV QSSPMQSMAS LESLEHSSRM QHGGGSDAVD
301: VWGWDSSSNG AMSK
101: LSIKESQAFG GTSGSDSDSE SMFDDGGLCD NGTNPTDVKR MRRMVSNRES ARRSRKRKQA HLVELETQVD QLRGDNASIF KQLTDANQQF TTAVTDNRIL
201: KSDVEALRVK VKLAEDMVAR GAMSCGLGHL GLSPAALNPC RVPDVLAGLD FLPGGPDDAC FGSLSPAEQV QSSPMQSMAS LESLEHSSRM QHGGGSDAVD
301: VWGWDSSSNG AMSK
001: MDNHTAKDIG MKRSASELAL QEYLTTSPLD PCFDLMNRDY TCELRDSLLW SEGLFPAGPF RDAQSSICEN LSADSPVSAN KPEVRGGVRR TTSGSSHVNS
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP
Arabidopsis Description
BZIP9Basic leucine zipper 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUD3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.