Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G144400.2 | Wheat | nucleus | 39.02 | 35.78 |
| TraesCS6B01G182500.5 | Wheat | nucleus | 36.24 | 33.23 |
| TraesCS6A01G154600.2 | Wheat | nucleus | 35.54 | 32.48 |
| Os02t0175100-01 | Rice | mitochondrion, nucleus | 28.92 | 29.96 |
| Zm00001d015421_P001 | Maize | nucleus | 32.75 | 28.4 |
| Os02t0266800-01 | Rice | nucleus | 28.57 | 27.52 |
| KXG29589 | Sorghum | nucleus | 26.83 | 24.06 |
| GSMUA_Achr1P23640_001 | Banana | nucleus | 14.98 | 17.13 |
| KRH04810 | Soybean | nucleus | 18.82 | 16.93 |
| VIT_04s0008g02750.t01 | Wine grape | nucleus | 20.21 | 16.62 |
| AT5G24800.1 | Thale cress | nucleus | 16.03 | 16.61 |
| CDX88132 | Canola | nucleus | 15.68 | 16.19 |
| CDY05397 | Canola | nucleus | 15.68 | 16.19 |
| CDY05458 | Canola | nucleus | 15.68 | 16.19 |
| KRH52637 | Soybean | nucleus | 16.03 | 15.97 |
| Bra020471.1-P | Field mustard | nucleus | 16.03 | 15.92 |
| KRH61976 | Soybean | nucleus | 16.38 | 15.67 |
| Bra009793.1-P | Field mustard | nucleus | 15.68 | 15.46 |
| Solyc08g006110.2.1 | Tomato | nucleus | 18.82 | 15.38 |
| PGSC0003DMT400038493 | Potato | nucleus | 18.47 | 15.19 |
| CDX80469 | Canola | nucleus | 14.63 | 15.11 |
| GSMUA_Achr1P15640_001 | Banana | nucleus | 15.68 | 13.04 |
| HORVU5Hr1G014170.10 | Barley | nucleus, plastid | 14.98 | 11.59 |
| HORVU1Hr1G077530.1 | Barley | nucleus | 13.24 | 9.29 |
| HORVU5Hr1G106120.3 | Barley | nucleus | 14.63 | 8.81 |
| KRH16196 | Soybean | cytosol, nucleus | 0.7 | 1.32 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | UniProt:A0A287TT32 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU6Hr1G031330 | EnsemblPlants:HORVU6Hr1G031330.2 | InterPro:IPR004827 | PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF347 | SUPFAM:SSF57959 | UniParc:UPI000B46F145 | InterPro:bZIP | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:132098841..132101167
Molecular Weight (calculated)
31189.4 Da
IEP (calculated)
10.753
GRAVY (calculated)
-0.750
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: NRRYPQEGAR EASRTAFHAR LHSFQPASHL SSFPLFFFPI RSIDPSVGRA PKRAFPPAFR LTSPRHLPPL KAPDADATYR STHQTPPPPQ LSSLPPRLRA
101: QQRRPDGRRR SAMKKCTSEL ELEAFIGGRG LFSEQKPGGG AAAGANGPYG LFSAADLSCA FGLADSTLNG TIQNHLWPQS PNLGARHPAV STTIESQSSI
201: YAASPTSATN LSIKESQAFG GTSGSDSDSE SMFDDGGLCD NGTNPTTDVK RMRRMVSNRE SARRSRKRKQ AHLVELETQA SHHNESN
101: QQRRPDGRRR SAMKKCTSEL ELEAFIGGRG LFSEQKPGGG AAAGANGPYG LFSAADLSCA FGLADSTLNG TIQNHLWPQS PNLGARHPAV STTIESQSSI
201: YAASPTSATN LSIKESQAFG GTSGSDSDSE SMFDDGGLCD NGTNPTTDVK RMRRMVSNRE SARRSRKRKQ AHLVELETQA SHHNESN
001: MDNHTAKDIG MKRSASELAL QEYLTTSPLD PCFDLMNRDY TCELRDSLLW SEGLFPAGPF RDAQSSICEN LSADSPVSAN KPEVRGGVRR TTSGSSHVNS
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP
Arabidopsis Description
BZIP9Basic leucine zipper 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUD3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.