Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G154600.2 | Wheat | nucleus | 96.17 | 95.86 |
| TraesCS6D01G144400.2 | Wheat | nucleus | 88.5 | 88.5 |
| Zm00001d015421_P001 | Maize | nucleus | 62.62 | 59.21 |
| Os02t0175100-01 | Rice | mitochondrion, nucleus | 49.2 | 55.6 |
| KXG29589 | Sorghum | nucleus | 54.63 | 53.44 |
| Os02t0266800-01 | Rice | nucleus | 47.6 | 50.0 |
| TraesCS7B01G391800.1 | Wheat | nucleus | 35.46 | 44.76 |
| GSMUA_Achr1P23640_001 | Banana | nucleus | 31.31 | 39.04 |
| HORVU6Hr1G031330.2 | Barley | nucleus | 33.23 | 36.24 |
| AT5G24800.1 | Thale cress | nucleus | 29.07 | 32.85 |
| CDX88132 | Canola | nucleus | 29.07 | 32.73 |
| CDY05397 | Canola | nucleus | 27.8 | 31.3 |
| Bra009793.1-P | Field mustard | nucleus | 29.07 | 31.27 |
| CDY05458 | Canola | nucleus | 27.48 | 30.94 |
| VIT_04s0008g02750.t01 | Wine grape | nucleus | 34.19 | 30.66 |
| CDX80469 | Canola | nucleus | 27.16 | 30.58 |
| KRH16196 | Soybean | cytosol, nucleus | 14.7 | 30.46 |
| Bra020471.1-P | Field mustard | nucleus | 27.48 | 29.76 |
| KRH04810 | Soybean | nucleus | 29.71 | 29.15 |
| PGSC0003DMT400038493 | Potato | nucleus | 31.95 | 28.65 |
| KRH61976 | Soybean | nucleus | 26.52 | 27.67 |
| KRH52637 | Soybean | nucleus | 25.24 | 27.43 |
| Solyc08g006110.2.1 | Tomato | nucleus | 30.67 | 27.35 |
| GSMUA_Achr1P15640_001 | Banana | nucleus | 30.03 | 27.25 |
| TraesCS5B01G059200.1 | Wheat | nucleus | 22.04 | 23.15 |
| TraesCS5B01G444100.2 | Wheat | nucleus | 25.88 | 20.25 |
| TraesCS1B01G343500.1 | Wheat | nucleus | 20.13 | 15.4 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF347 |
| SMART:SM00338 | SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS6B01G182500 | EnsemblPlants:TraesCS6B01G182500.5 | InterPro:bZIP | TIGR:cd14702 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:204333394..204335462
Molecular Weight (calculated)
32960.4 Da
IEP (calculated)
5.382
GRAVY (calculated)
-0.420
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKCASELEL EAFIRGRGLA AEQKPGSAAA GANGPYGLFS AADLSGTFGF ADSQTLNGTI QNHLWPQSPN LGARHPAVST TIESQSSIYA AASPTSATNL
101: SIKESQAFGG TSGSDSDSES MFDDGGLCDN GTNPTDVKRM RRMVSNRESA RRSRKRKQAH LVELETQVDQ LRGDNASIFK QLTDANQQFT TAVTDNRILK
201: SDVEALRVKV KLAEDMVARG AMSCGLGHLG LSPAALNPCR VPDVLAGLDF LPGGADDACF GSLSPAEQVQ SSPMQSMASL ESLEHSSRMQ HGGGSDGVDV
301: WGWDSSSNGA MSK
101: SIKESQAFGG TSGSDSDSES MFDDGGLCDN GTNPTDVKRM RRMVSNRESA RRSRKRKQAH LVELETQVDQ LRGDNASIFK QLTDANQQFT TAVTDNRILK
201: SDVEALRVKV KLAEDMVARG AMSCGLGHLG LSPAALNPCR VPDVLAGLDF LPGGADDACF GSLSPAEQVQ SSPMQSMASL ESLEHSSRMQ HGGGSDGVDV
301: WGWDSSSNGA MSK
001: MDNHTAKDIG MKRSASELAL QEYLTTSPLD PCFDLMNRDY TCELRDSLLW SEGLFPAGPF RDAQSSICEN LSADSPVSAN KPEVRGGVRR TTSGSSHVNS
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP
Arabidopsis Description
BZIP9Basic leucine zipper 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUD3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.