Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G332200.1 | Wheat | nucleus | 93.44 | 84.86 |
| TraesCS1B01G343500.1 | Wheat | nucleus | 79.51 | 71.15 |
| HORVU1Hr1G077530.1 | Barley | nucleus | 59.56 | 53.3 |
| TraesCS5A01G440400.1 | Wheat | nucleus | 25.14 | 23.47 |
| Solyc08g022080.2.1 | Tomato | mitochondrion, nucleus | 9.02 | 23.4 |
| Bra010010.1-P | Field mustard | nucleus | 19.13 | 22.29 |
| AT5G28770.2 | Thale cress | nucleus | 19.13 | 22.29 |
| Os07t0182000-01 | Rice | nucleus | 26.5 | 22.25 |
| CDY48665 | Canola | nucleus | 19.13 | 22.01 |
| CDX86210 | Canola | nucleus | 18.85 | 21.97 |
| Bra020620.1-P | Field mustard | nucleus | 18.58 | 21.59 |
| TraesCS5A01G057500.2 | Wheat | nucleus | 17.49 | 21.48 |
| CDY33887 | Canola | nucleus | 18.31 | 21.27 |
| CDY05606 | Canola | nucleus | 18.31 | 21.0 |
| KXG34539 | Sorghum | nucleus | 22.68 | 20.54 |
| EER95953 | Sorghum | nucleus | 24.86 | 20.45 |
| Zm00001d018971_P003 | Maize | nucleus | 24.59 | 19.74 |
| CDX73466 | Canola | nucleus | 19.4 | 18.78 |
| CDX78251 | Canola | nucleus | 19.67 | 18.75 |
| Bra007083.1-P | Field mustard | nucleus | 19.4 | 18.49 |
| AT4G02640.2 | Thale cress | nucleus | 21.04 | 18.47 |
| AT3G54620.1 | Thale cress | nucleus | 20.22 | 18.36 |
| PGSC0003DMT400050096 | Potato | nucleus | 22.13 | 17.96 |
| Solyc01g097330.2.1 | Tomato | nucleus | 21.58 | 17.4 |
| Bra036251.1-P | Field mustard | nucleus | 18.58 | 17.26 |
| CDY22069 | Canola | nucleus | 18.58 | 17.22 |
| CDY21903 | Canola | nucleus | 18.31 | 17.01 |
| CDY55832 | Canola | nucleus | 13.66 | 15.87 |
| CDY14423 | Canola | nucleus | 16.12 | 15.86 |
| CDY07692 | Canola | nucleus | 16.12 | 15.82 |
| Bra000102.1-P | Field mustard | nucleus | 15.3 | 15.3 |
| TraesCS6A01G154600.2 | Wheat | nucleus | 13.11 | 15.29 |
| KRG89569 | Soybean | nucleus | 8.74 | 14.88 |
| TraesCS7A01G488600.2 | Wheat | nucleus | 9.84 | 14.34 |
| VIT_00s1609g00010.t01 | Wine grape | cytosol | 3.01 | 7.64 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | InterPro:Basic_leucine-zipper_C | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | PFAM:PF00170 | PFAM:PF12498 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF90 |
| SMART:SM00338 | SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS1A01G329900 | EnsemblPlants:TraesCS1A01G329900.1 | InterPro:bZIP | SEG:seg |
Description
No Description!
Coordinates
chr1A:-:518808642..518812042
Molecular Weight (calculated)
39575.4 Da
IEP (calculated)
4.918
GRAVY (calculated)
-0.554
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPVFFSLEE AMPEPDSNPC RTASPPLEAH VLAGGLGGVG AGKVVGGGAT NECATEWCFH ESVDEPWLLN VPTAPVANPE ASTLYPNPTA EGSRKRPYDV
101: HEMVGAVEVI PTPPAASPEV DPVAYNAMLR RKLDAHLAAV AMLRNTQGIC RQSSHDNGAS QNPDSIQGSE NHTEDVSVHQ LSSSSLEPSP SDGDMEGEAQ
201: TIGTMHISAE KANKRKESNR DSARRSRSRK AAHTKELEEQ VKMAEETMKR VTCTNNFPQA ISGTSLRIPF SGSPLDGICD NPLPTQNTSL SYLPTTTTDF
301: AVKNNYIPEP APAFQIHDQM SSLHMQPMSC LDHHPQMMHI GIPTSTPTPQ RESTTLDSNE IVNMMM
101: HEMVGAVEVI PTPPAASPEV DPVAYNAMLR RKLDAHLAAV AMLRNTQGIC RQSSHDNGAS QNPDSIQGSE NHTEDVSVHQ LSSSSLEPSP SDGDMEGEAQ
201: TIGTMHISAE KANKRKESNR DSARRSRSRK AAHTKELEEQ VKMAEETMKR VTCTNNFPQA ISGTSLRIPF SGSPLDGICD NPLPTQNTSL SYLPTTTTDF
301: AVKNNYIPEP APAFQIHDQM SSLHMQPMSC LDHHPQMMHI GIPTSTPTPQ RESTTLDSNE IVNMMM
001: MDGSMNLGNE PPGDGGGGGG LTRQGSIYSL TFDEFQSSVG KDFGSMNMDE LLKNIWSAEE TQAMASGVVP VLGGGQEGLQ LQRQGSLTLP RTLSQKTVDQ
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQAY TVELEAEVAK LKEENDELQR KQARIMEMQK NQETEMRNLL
401: QGGPKKKLRR TESGPW
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQAY TVELEAEVAK LKEENDELQR KQARIMEMQK NQETEMRNLL
401: QGGPKKKLRR TESGPW
Arabidopsis Description
ABF2abscisic acid responsive elements-binding factor 2 [Source:TAIR;Acc:AT1G45249]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.