CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90165
EER90738
EER95953
EER96530
EES04085
EES14897
EES16316
KXG29589
KXG34539
OQU89229

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54620.1	EER96530	AT1G75390.1	16709202
AT3G54620.1	EES14897	AT1G75390.1	16709202
AT3G54620.1	EER96530	AT2G18160.1	16709202
AT3G54620.1	EES14897	AT2G18160.1	16709202
AT3G54620.1	EES04085	AT3G24650.1	12657652
AT3G54620.1	OQU89229	AT3G24650.1	12657652
AT3G54620.1	EER90738	AT3G54620.1	16709202
AT3G54620.1	EER95953	AT3G54620.1	16709202
AT3G54620.1	EES16316	AT3G54620.1	16709202
AT3G54620.1	KXG34539	AT3G54620.1	16709202
AT3G54620.1	EER96530	AT3G62420.1	16709202
AT3G54620.1	EES14897	AT3G62420.1	16709202
AT3G54620.1	EER96530	AT3G62420.1	16810321
AT3G54620.1	EES14897	AT3G62420.1	16810321
AT3G54620.1	EER96530	AT4G34590.1	16709202
AT3G54620.1	EES14897	AT4G34590.1	16709202
AT3G54620.1	EER90165	AT5G24800.1	16709202
AT3G54620.1	KXG29589	AT5G24800.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34539	Sorghum	nucleus	73.48	80.94
Zm00001d018971_P003	Maize	nucleus	46.74	45.61
Solyc08g022080.2.1	Tomato	mitochondrion, nucleus	13.03	41.13
EER90738	Sorghum	nucleus	30.56	33.58
Os07t0182000-01	Rice	nucleus	28.31	28.9
AT5G28770.2	Thale cress	nucleus	20.22	28.66
CDY48665	Canola	nucleus	20.45	28.62
KRG89569	Soybean	nucleus	13.71	28.37
Bra010010.1-P	Field mustard	nucleus	20.0	28.34
CDX86210	Canola	nucleus	20.0	28.34
TraesCS1D01G332200.1	Wheat	nucleus	25.39	28.04
CDY33887	Canola	nucleus	19.78	27.94
Bra020620.1-P	Field mustard	nucleus	19.78	27.94
CDY05606	Canola	nucleus	20.0	27.9
TraesCS1B01G343500.1	Wheat	nucleus	25.39	27.63
HORVU1Hr1G077530.1	Barley	nucleus	25.17	27.38
CDY55832	Canola	nucleus	17.98	25.4
CDX73466	Canola	nucleus	21.12	24.87
TraesCS1A01G329900.1	Wheat	nucleus	20.45	24.86
Bra000102.1-P	Field mustard	nucleus	20.45	24.86
AT3G54620.1	Thale cress	nucleus	22.47	24.81
CDY14423	Canola	nucleus	20.45	24.46
CDY07692	Canola	nucleus	20.45	24.4
CDY21903	Canola	nucleus	21.57	24.37
EES16316	Sorghum	nucleus	17.3	24.29
Bra036251.1-P	Field mustard	nucleus	21.35	24.11
CDX78251	Canola	nucleus	20.67	23.96
PGSC0003DMT400050096	Potato	nucleus	24.27	23.95
CDY22069	Canola	nucleus	21.12	23.8
Bra007083.1-P	Field mustard	nucleus	20.45	23.7
Solyc01g097330.2.1	Tomato	nucleus	23.37	22.91
AT4G02640.2	Thale cress	nucleus	20.45	21.82
EER90165	Sorghum	nucleus	13.93	21.6
KXG29589	Sorghum	nucleus	14.38	20.0
VIT_00s1609g00010.t01	Wine grape	cytosol	3.82	11.81

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.2	EntrezGene:8060745	InterPro:Basic_leucine-zipper_C	UniProt:C5XB30
ncoils:Coil	EnsemblPlants:EER95953	ProteinID:EER95953	ProteinID:EER95953.1	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	PFAM:PF00170	PFAM:PF12498	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF90	SMART:SM00338	EnsemblPlantsGene:SORBI_3002G054800	SUPFAM:SSF57959	UniParc:UPI0001A83012	RefSeq:XP_002459432.1
InterPro:bZIP	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:5243140..5247362

Molecular Weight (calculated)

48647.1 Da

IEP (calculated)

4.256

GRAVY (calculated)

-0.522

Length

445 amino acids

Sequence
(BLAST)

001: MDHVFSMEEI LGPFWDLPLP PTPPEQQPLV VTGTDSVIVD GVVTHVGDGE GEQQPLVTGT DSVVIDGVVT HGGDGEGGDM LDQIQNTTEW TFERLLEEEL
101: LTNTTTVANS SCPALNVDPL VEVDHGTMAP AEVSAVGDPM EYNAILKRKL DEDLMAFKMW RASTSGVNSE GSNNENGGGS KNLVQNKLNS ADPTNNHAQN
201: ADLRVRFATS SSSRDPSPSD EDMDGEVEIL GFKMPTEERV RKRKESNRES ARRSRYRKAA HLKDLEDQVE KLKAENSCLL RRLAAMNRKY NEANVDNRVL
301: KADMETLRAK VKMGEDSLKR VIEMSSLTSI PIPELPSSSD VPVPIHEEIV NYFTTTPADD ALADNSFMPM PEPLALQLQA EEPTINGALN ATEMNQIATH
401: CAAGSQPSME LIQETMGAMM PTSPGSTLQE SELLGPNETI NMHTY

Best Arabidopsis Sequence Match ( AT5G24800.1 )
(BLAST)

001: MDNHTAKDIG MKRSASELAL QEYLTTSPLD PCFDLMNRDY TCELRDSLLW SEGLFPAGPF RDAQSSICEN LSADSPVSAN KPEVRGGVRR TTSGSSHVNS
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP

Arabidopsis Description

BZIP9Basic leucine zipper 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.