CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90738
EER91208
EER95953
EER98955
EES05438
EES16316
KXG26596
KXG33574
KXG34539

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	EER91208	AT1G08780.1	10743655
AT3G24650.1	KXG26596	AT3G22320.1	10743655
AT3G24650.1	KXG33574	AT3G22320.1	10743655
AT3G24650.1	EER90738	AT3G54620.1	12657652
AT3G24650.1	EER95953	AT3G54620.1	12657652
AT3G24650.1	EES16316	AT3G54620.1	12657652
AT3G24650.1	KXG34539	AT3G54620.1	12657652
AT3G24650.1	EER98955	AT5G20910.1	10743655
AT3G24650.1	EES05438	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042396_P003	Maize	nucleus	87.02	88.28
Os01t0911700-02	Rice	nucleus	68.05	65.61
HORVU3Hr1G092690.2	Barley	nucleus	60.48	62.17
TraesCS3D01G412800.1	Wheat	nucleus	61.2	61.99
TraesCS3B01G452200.1	Wheat	nucleus	60.63	61.77
TraesCS3A01G417300.1	Wheat	nucleus	60.91	61.71
OQU89229	Sorghum	nucleus	27.25	47.51
GSMUA_AchrUn_...	Banana	nucleus	36.95	38.2
PGSC0003DMT400051746	Potato	nucleus	29.53	35.69
GSMUA_Achr7P23040_001	Banana	nucleus	37.09	35.47
Solyc06g083590.2.1	Tomato	nucleus	28.67	34.72
PGSC0003DMT400051934	Potato	nucleus	30.24	34.19
Solyc06g083600.1.1	Tomato	nucleus	29.96	33.87
VIT_07s0005g05400.t01	Wine grape	nucleus	35.09	33.56
CDY15121	Canola	nucleus	31.81	33.18
KRH46807	Soybean	nucleus	35.66	32.85
Bra013248.1-P	Field mustard	nucleus	33.1	32.36
CDX93029	Canola	nucleus	33.1	32.31
AT3G24650.1	Thale cress	nucleus	32.95	32.08
KRG99861	Soybean	nucleus	34.66	32.06
EES14344	Sorghum	nucleus	12.13	22.91
KXG33236	Sorghum	mitochondrion, nucleus	11.55	20.66
KXG27429	Sorghum	nucleus	11.27	17.52
KXG36480	Sorghum	nucleus	11.7	8.47
EER99914	Sorghum	nucleus	11.55	8.46

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	EntrezGene:8078714	InterPro:B3_DNA-bd	UniProt:C5XFL5	InterPro:DNA-bd_pseudobarrel_sf
EnsemblPlants:EES04085	ProteinID:EES04085	ProteinID:EES04085.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1
SMART:SM01019	EnsemblPlantsGene:SORBI_3003G398200	SUPFAM:SSF101936	UniParc:UPI0001A85536	RefSeq:XP_002458965.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:70761577..70766190

Molecular Weight (calculated)

74254.7 Da

IEP (calculated)

5.685

GRAVY (calculated)

-0.575

Length

701 amino acids

Sequence
(BLAST)

001: MDASGGSSPP HSQENPPEHG GDMGEAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS STFSSSSSSN SSSAYTNTTA GGAGGGGAAA AGEPSEPASA
101: GEGFDALDDI DQILDFASLS MPWDSEPFPE VSLMLEDAMS APPNPVCDVR REEKPVLEGT GREEACMDAS SVAAGEELPR FFMEWLTSNR ENISAEDLRG
201: IRLRRSTIEA AAARLGGGRQ GNMQLLKLIL TWVQNHHLQK KRPRDVMEEA AGLHGQLPSP GANQGYEFPA GGQDMAAGGG TSWMPYQQQP FTPPAYGGDA
301: VYPNAAGQQY PFHQSSSTSS VVVNSQPFSP PTVGDMHGAG GANMAWPQQY VPFPTPGAST GSYPMPQPFS AGFGGQYAAA GAAGGHPTMA PQRMAGVEAS
401: ATKEARKKRM ARQRRLSCLQ QQRNQQLNLG QIQGSVHPQE PSPRSAHSTP VTPSAGGWGF WSPSSQQQVQ NPLSIKSNSS GEPVPLSLEA VTAPPAKPAP
501: GARLDDSPQR LAAASDKRQG AKADKNLRFL LQKVLKQSDV GSLGRIVLPK KEAEVHLPEL KTRDGISIPM EDIGTSRVWN MRYRFWPNNK SRMYLLENTG
601: EFVRSNELQE GDFIVIYSDV KSGKFLIRGV KVRPPAQEQG NGSSAAGKHK LMSPAGPEKA SVPGDADVDG VSGACKGRSP QGVRRDRQQG AAAMNQMAVS
701: I

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.