CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021790_P010	Maize	nucleus	91.22	91.31
Zm00001d006597_P003	Maize	plastid	90.19	90.47
Os07t0563300-01	Rice	nucleus	72.11	73.09
TraesCS2A01G204300.1	Wheat	plastid	67.77	68.05
TraesCS2D01G211600.2	Wheat	plastid	67.67	67.95
TraesCS2B01G231800.1	Wheat	plastid	67.25	67.81
HORVU2Hr1G040410.4	Barley	nucleus, plastid	66.01	65.4
HORVU2Hr1G040400.1	Barley	nucleus	28.31	64.93
GSMUA_Achr4P23790_001	Banana	nucleus	50.72	55.23
GSMUA_Achr8P03800_001	Banana	nucleus	46.59	55.2
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	50.1	54.43
KRH21568	Soybean	nucleus	43.7	48.12
KRH10760	Soybean	nucleus	43.59	48.06
VIT_00s0181g00260.t01	Wine grape	nucleus	28.51	48.0
Bra013535.1-P	Field mustard	nucleus	26.45	36.62
CDX82834	Canola	nucleus	26.76	35.82
CDX79071	Canola	nucleus	26.65	35.73
Solyc02g079020.2.1	Tomato	nucleus	38.43	35.67
AT4G21550.1	Thale cress	nucleus, plastid	25.83	34.97
EER99914	Sorghum	nucleus	34.4	34.8
PGSC0003DMT400057590	Potato	nucleus	12.5	26.19
KXG33236	Sorghum	mitochondrion, nucleus	6.61	16.33
EES14344	Sorghum	nucleus	5.58	14.56
OQU89229	Sorghum	nucleus	5.79	13.93
KXG27429	Sorghum	nucleus	5.89	12.64
EES04085	Sorghum	nucleus	8.47	11.7

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	UniProt:A0A1B6QF04	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR011124
InterPro:IPR015300	EnsemblPlants:KXG36480	ProteinID:KXG36480	ProteinID:KXG36480.1	ProteinID:KXG36481.2	PFAM:PF02362
PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	SMART:SM01019
EnsemblPlantsGene:SORBI_3002G339800	SUPFAM:SSF101936	UniParc:UPI00081AC1DE	InterPro:Znf_CW	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:70686651..70695575

Molecular Weight (calculated)

106263.0 Da

IEP (calculated)

8.346

GRAVY (calculated)

-0.797

Length

968 amino acids

Sequence
(BLAST)

001: MSSPAPPQQA PPAQPPPPPA AAPPTAVPTT VVSATPISVQ LPPIQPKPPP PQPQAQAQQQ PPPGSASGPQ PPTPAQLLNL GPQPPLYRGP ICWNSYCKDP
101: DPNSFGRRGW KVRSGPPYSV YADLCGRCYS QFEQGIYCET FHSEEGGWRN CESCGRRVHC GCIVSIHKYQ LRDAGGVDCA KCARSTRAAM APPSPVWTAP
201: IHTSQNVSDR RDIPVKSWRP PAGQISSQWR QTNLWSMSSV QSDLQQRLAF EFDRPSGSEK LLPGRTFIHA QERKFDDMHD RPTTPVGMNH IIRERDPNGH
301: GQPTNMDPAY SYTLYHRDGS HPNNLHDPSH PGGENDSLSS RKVAMPEAST SADAGFKLDS HHPSNLKDDP PSLSVGLASN FASQNGQKDH IRIAPSQQQA
401: QMASSSLQKQ FYSHTVTGYN EFQAQLRNGR PRMDAKARSQ LLPRYWPRIT DQELQHLSSD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ
501: PEGLPLKVQD ASGKEWIFQF RFWPNNNSRM YVLEGVTPCI QAMQLQAGDT VTFSRIDPEG KLIMGFRKAT NNSSEQEQIT KPANGAPATS EANGKVSGAD
601: SSPNAAVSRQ NKVNIETKSS SPVEQATALK MDKDGLTQKE GPGTASSSPG SVKRKTTNLG QKNKRLRMDN EESMELKITW EEAQELLRPP PKAPSIVIVD
701: GHEFEEYEEP PVLGRKTYFV ADKSGSDHQW AQCEDCSKWR KLPIDALLPS KWTCSDNKWD PERSSCEHAQ EISMEELAEI IPIKYAKKPK SRMESDAIDA
801: SDGLDTLANL AILGEGEALP SQPTTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCM TVRRRFRTLM LRREKKATTD TPRKKETGQS SEKVTQAVST
901: PPVASASATS PPRKADGNAD GAEDMAVDHK VTSSPVKNHI DLNIQPDRDD EQSPKSGTAG LLSRDNPS

Best Arabidopsis Sequence Match ( AT4G32010.2 )
(BLAST)

001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGHSNSKIIP LFEKVLSASD AGRIGRLVLP
301: KACAEAYFPP ISLPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTATQM FKGSSEPNLN
401: MFSNSLNPGC GDINWSKLEK SEDMAKDNLF LQSSLTSARK RVRNIGTKSK RLLIDSVDVL ELKITWEEAQ ELLRPPQSTK PSIFTLENQD FEEYDEPPVF
501: GKRTLFVSRQ TGEQEQWVQC DACGKWRQLP VDILLPPKWS CSDNLLDPGR SSCSAPDELS PREQDTLVRQ SKEFKRRRLA SSNEKLNQSQ DASALNSLGN
601: AGITTTGEQG EITVAATTKH PRHRAGCSCI VCSQPPSGKG KHKPSCTCTV CEAVKRRFRT LMLRKRNKGE AGQASQQAQS QSECRDETEV ESIPAVELAA
701: GENIDLNSDP GASRVSMMRL LQAAAFPLEA YLKQKAISNT AGEQQSSDMV STEHGSSSAA QETEKDTTNG AHDPVN

Arabidopsis Description

VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.