CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022440_P005	Maize	plastid	94.57	93.98
Os07t0679700-01	Rice	nucleus	81.4	82.09
TraesCS2B01G122500.1	Wheat	nucleus	80.77	81.37
TraesCS2A01G105600.1	Wheat	nucleus	80.67	81.35
TraesCS2D01G105300.1	Wheat	nucleus	77.43	81.34
KRH37982	Soybean	cytosol, nucleus, plastid	3.55	77.27
HORVU2Hr1G017760.4	Barley	plastid	78.27	72.3
GSMUA_Achr5P27930_001	Banana	nucleus	38.98	64.31
GSMUA_Achr8P01750_001	Banana	nucleus	52.77	58.93
VIT_08s0058g01300.t01	Wine grape	nucleus	49.84	51.62
CDX72340	Canola	nucleus	40.54	50.46
CDY13468	Canola	nucleus	40.33	50.13
Bra023968.1-P	Field mustard	nucleus	40.23	50.0
KRH65426	Soybean	nucleus	46.92	49.61
AT4G32010.1	Thale cress	nucleus	39.71	48.72
KRH76125	Soybean	nucleus	45.87	48.35
Solyc10g075030.1.1	Tomato	nucleus	43.89	47.78
Solyc06g082520.2.1	Tomato	nucleus	41.59	47.1
VIT_06s0004g08100.t01	Wine grape	nucleus	42.63	46.95
CDY02066	Canola	nucleus	38.35	46.81
CDX97828	Canola	nucleus	37.2	46.66
Bra021635.1-P	Field mustard	nucleus	37.62	46.51
CDY10738	Canola	nucleus	38.24	46.51
Bra018313.1-P	Field mustard	nucleus	38.24	46.33
CDX84832	Canola	nucleus	37.51	45.73
Bra022801.1-P	Field mustard	nucleus	37.3	45.59
CDY29672	Canola	nucleus	37.51	45.56
AT2G30470.1	Thale cress	nucleus	36.99	44.81
CDY23997	Canola	nucleus	36.78	44.39
KRH30646	Soybean	nucleus	41.9	44.02
KRH72829	Soybean	nucleus	32.6	43.45
KRG98129	Soybean	nucleus	41.8	42.78
KRH17186	Soybean	nucleus	31.77	41.99
KXG36480	Sorghum	nucleus	34.8	34.4
PGSC0003DMT400057590	Potato	nucleus	11.39	23.59
EES14344	Sorghum	nucleus	6.06	15.63
KXG33236	Sorghum	mitochondrion, nucleus	6.27	15.31
OQU89229	Sorghum	nucleus	5.54	13.18
KXG27429	Sorghum	nucleus	5.75	12.2
EES04085	Sorghum	nucleus	8.46	11.55

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	InterPro:B3_DNA-bd	UniProt:C5X5M1	InterPro:DNA-bd_pseudobarrel_sf
EnsemblPlants:EER99914	ProteinID:EER99914	ProteinID:EER99914.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	ProteinID:KXG36948.1	PFAM:PF02362
PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF29	SMART:SM01019
EnsemblPlantsGene:SORBI_3002G418200	SUPFAM:SSF101936	unigene:Sbi.4896	UniParc:UPI0001A84857	RefSeq:XP_002463393.1	InterPro:Znf_CW
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:76599479..76606617

Molecular Weight (calculated)

104994.0 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.562

Length

957 amino acids

Sequence
(BLAST)

001: MAMPGGGAVA AKRCMNPACG GPASSVVGAG GDWRKGWPLR SGGFALLCDK CGLAYEQFVF CDIFHQKESG WRDCSFCGKR LHCGCVASKN SYDLLDSGGV
101: QCVTCMKNSA AQSASGQVVP KLFQCPNNLR FLGKTDELLS SRKFEQPPSL MLDSRNDDIA IVNKSNHLFM VRGIEAGQSS NILRQKEIEN GSRQIKWEQP
201: TLSIGDMGRP FLTRSQSALE SPQCTRRDDN KDPTTDSTSE SFSEACLSMS LGIASNGNRM EATSTAERPM LSPTTAIAEG RELATTLSPY QHAQRARHFL
301: TRPPRVGEGA AFDPTRDMFP HLRVARPPAE GRGRNQLLPR YWPRITDQEL QQISGDSNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGR
401: PLTIQDARGK EWHFQFRFWP NNNSRMYVLE GVTPCIQSLQ LQAGDTVTFS RIDPGGKLVM GFRKATNTVS LPDSQISAIA NGSILSETLF STANENIGVV
501: SGYPGFLHSI KGAADLHPSS LYDHHMNSAD GDVSWNKADK FGGRPDEGSL QFLQKRSRNI GSKSRRFLID AEDAMELKLT WEEAQELLRP APTAKPTVVM
601: IEDYEFEEYD EPPVFAKRSI FTIRATGEQD QWIQCDECSK WRRLPLNVIV ASKWTCTDNS WDPKSCSCSA PEELTPKELQ SVMQQYEEMR RRKGSYGLKL
701: NVAEMDASSL DALATAAVFG EVGNQGTASV ATTTKHPRHR PGCTCIVCIQ PPSGKGPKHN PSCTCNVCMT VRRRFKTLMM RKKQRQSERE EAEASKKITW
801: VNREEPEGSN LSRSPQTLDT TRDNSDVTMF DKVADMNKGH IDLNFHPAPA ARGDHGQHGV QQPRPVSMMG LLEVASRPLD NYMKQNGLTS LVGEQGGGSS
901: STATVPPGPV ESEERTSNEG RVTSASAERE PDAMAIDEAG ENQQDKAADD AAAPAAT

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.